Rh7AG188800

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002151
Physical Location & Seq
Forward (+)
16913246 .. 16913461
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG188800.1

Sequence Viewer

Length: 216 bp
ATGGTAAAGAGCACCGAGCGCGTTTGCTACTATGATACGTTCGGCCTCGAACCCAACTGCTCGATGGATGATGCCAGACATGCTTACCATGAACTGTCCAAAATATACCACCCGGACAAATACAACTCCAGTTGCGGCATGCCGAAAGATGAAGCCTCCGTCAAATTTCTAGCAATCAAAGACGCCTACGACATTCTCAAAGAACCCGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

71

Amino Acids

8.21

Weight (kDa)

5.04

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 70 1.6e-12 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 1 cut(s) 135
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 14
AoxI GGCC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 14
BccI CCATC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 1 cut(s) 170
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 113
BsnI GGCC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 14
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 45
BspFNI CGCG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 129
BssNI GRCGYC 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 18, 80
BstNSI RCATGY 2 cut(s) 83, 142
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 21
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 140
CfoI GCGC 1 cut(s) 21
CseI GACGC 1 cut(s) 191
CviAII CATG 3 cut(s) 80, 89, 139
CviJI RGCY 2 cut(s) 45, 155
CviKI_1 RGCY 2 cut(s) 45, 155
FaeI CATG 3 cut(s) 83, 92, 142
FaiI YATR 5 cut(s) 33, 81, 90, 106, 140
FatI CATG 3 cut(s) 79, 88, 138
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 136
GsuI CTGGAG 1 cut(s) 112
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 83, 92, 142
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HpaII CCGG 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 80
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 83, 92, 142
HspAI GCGC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 88, 126, 142
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 164
MnlI CCTC 2 cut(s) 56, 166
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 18, 80
NciI CCSGG 1 cut(s) 113
NlaIII CATG 3 cut(s) 83, 92, 142
NspI RCATGY 2 cut(s) 83, 142
PaeI GCATGC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 137
SatI GCNGC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 14
SetI ASST 1 cut(s) 41
SfaNI GCATC 1 cut(s) 61
SphI GCATGC 1 cut(s) 142
Sse9I AATT 1 cut(s) 164
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 48, 62
TasI AATT 1 cut(s) 164
TauI GCSGC 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 105, 165
TspGWI ACGGA 1 cut(s) 148
XapI RAATTY 1 cut(s) 164
XceI RCATGY 2 cut(s) 83, 142
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.