Rh2DG363700

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002151
Physical Location & Seq
Reverse (-)
51346434 .. 51347156
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG363700.1

Sequence Viewer

Length: 723 bp
ATGCAGATGGTAGCGAAGAGGGAGGTGGAGAGAAAGAGGGAGATAGAGGAGGAGAGGGAGAGGAGGAAGCGGTTGAAGAAAGAGAAGTTGGTGAAGGCTATAGAGTATGAGGAGCAGGAGTGGACGAAACCAGTTGAGAGGAAGAGAAAATATAGTAACAAGGAGGAGGAGGAGGAGGAAAAAGAGAGAGACGAATGGGAGTGTGTAGTTTGCAGGAAGGTGTACAGGAGTGAGCGGCAGTGCAGGAATCATGAGCAATCAAAAAAGCATCTCCGCATGGTTGCAAAGTTAACGGAGTTGTTGGAGGTTTTGGAGGAAAAACCAGATGAAGAAGAGGTTTTGGAGGAAGCAAAAAGGAATGAGGTGGTTCGAGGGAGTGATGGCGAAGAGGAGTTTGTTGATGGTGTTAATGATAATCAGAGGGAAAAGCTTAGTGAAACAGGTGAAGTTGATGATGAGGAAGTGGAGGAGGATGAGATGGGTGTTCTTGAAGCAATGGTGGCGAGGCGAAAGACAATGGAAGAGGTTGGTGAAGATATTCTTGAATCAATATTGGTTGAACCCATGGCGAGTAGTAGTCAAGAGGTGAAGAATGCTGACGAGGTGGCTATGGAGCATGACAAGCTAAAGAACGCCAATAAGAATGAAGGAGAAAGGAAACCGAGGAGAAGAAGAGCCAAGAGTGTACTAGAACTGACGAACGTGATGGTTCAAATAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

240

Amino Acids

28.63

Weight (kDa)

4.98

Isoelectric Point (pI)

66.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_jaz PF12171 66 - 90 3.2e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 235
AciI CCGC 3 cut(s) 70, 235, 274
AfaI GTAC 2 cut(s) 224, 687
AgsI TTSAA 5 cut(s) 76, 491, 545, 560, 713
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 2 cut(s) 430, 625
AluI AGCT 2 cut(s) 430, 625
Alw26I GTCTC 1 cut(s) 183
Asp700I GAANNNNTTC 1 cut(s) 537
AsuHPI GGTGA 4 cut(s) 103, 455, 542, 598
BccI CCATC 4 cut(s) 374, 395, 472, 700
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 689
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmsI GCATC 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 564, 662
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 564, 662
BseGI GGATG 1 cut(s) 478
BseMI GCAATG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 598
Bsp1407I TGTACA 1 cut(s) 222
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 3 cut(s) 70, 235, 274
BspHI TCATGA 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 667
BsrBI CCGCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 564, 662
BssT1I CCWWGG 1 cut(s) 564
Bst6I CTCTTC 6 cut(s) 11, 137, 327, 381, 516, 667
BstAUI TGTACA 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 431
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 1 cut(s) 478
BstMAI GTCTC 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 500, 622
BstSFI CTRYAG 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 1 cut(s) 478
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 250
Csp6I GTAC 2 cut(s) 223, 686
CviAII CATG 4 cut(s) 251, 277, 565, 617
CviJI RGCY 5 cut(s) 98, 430, 608, 625, 677
CviKI_1 RGCY 5 cut(s) 98, 430, 608, 625, 677
CviQI GTAC 2 cut(s) 223, 686
DdeI CTNAG 1 cut(s) 431
Eam1104I CTCTTC 6 cut(s) 11, 137, 327, 381, 516, 667
EarI CTCTTC 6 cut(s) 11, 137, 327, 381, 516, 667
Eco130I CCWWGG 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 564
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 4 cut(s) 254, 280, 568, 620
FaiI YATR 9 cut(s) 101, 108, 153, 252, 278, 566, 611, 618, 721
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 4 cut(s) 250, 276, 564, 616
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 689
GluI GCNGC 1 cut(s) 236
Hin1II CATG 4 cut(s) 254, 280, 568, 620
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 2 cut(s) 247, 545
HpaI GTTAAC 1 cut(s) 291
HphI GGTGA 4 cut(s) 103, 455, 542, 598
Hpy166II GTNNAC 4 cut(s) 123, 223, 291, 686
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 4 cut(s) 251, 488, 542, 581
Hpy8I GTNNAC 4 cut(s) 123, 223, 291, 686
HpyAV CCTTC 3 cut(s) 88, 211, 641
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 4 cut(s) 4, 213, 243, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 622
HpyF3I CTNAG 1 cut(s) 431
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 4 cut(s) 254, 280, 568, 620
KspAI GTTAAC 1 cut(s) 291
LguI GCTCTTC 1 cut(s) 667
LmnI GCTCC 2 cut(s) 112, 613
LpnPI CCDG 7 cut(s) 101, 144, 199, 211, 229, 336, 426
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 689
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 1 cut(s) 155
MbiI CCGCTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 2 cut(s) 290, 408
Mva1269I GAATGC 1 cut(s) 598
MwoI GCNNNNNNNGC 2 cut(s) 500, 622
NcoI CCATGG 1 cut(s) 564
NlaIII CATG 4 cut(s) 254, 280, 568, 620
PagI TCATGA 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 667
PctI GAATGC 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 2 cut(s) 247, 545
PkrI GCNGC 1 cut(s) 237
RsaI GTAC 2 cut(s) 224, 687
RsaNI GTAC 2 cut(s) 223, 686
SapI GCTCTTC 1 cut(s) 667
SaqAI TTAA 2 cut(s) 290, 408
SatI GCNGC 1 cut(s) 236
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 1 cut(s) 99
SsiI CCGC 3 cut(s) 70, 235, 274
SspI AATATT 1 cut(s) 552
SspMI CTAG 1 cut(s) 689
StyI CCWWGG 1 cut(s) 564
TaiI ACGT 1 cut(s) 705
TaqI TCGA 1 cut(s) 370
TatI WGTACW 2 cut(s) 222, 685
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 2 cut(s) 247, 545
Tru1I TTAA 2 cut(s) 290, 408
Tru9I TTAA 2 cut(s) 290, 408
TscAI CASTG 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 342, 660
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.