Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000617.1

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Reverse (-)

92979 .. 93455

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000617.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggtgaagagcaccgagcgcgtctgctactacgagaccttaggcctcgaacccaactgctcaatggatgatgtcagacatgcctaccatgaactttccataatataccacccggacaaatacaagtccagttgcggcatgacagaagacgaagccgccgccaaattcctagagatcaaagacgcctacaacattctcaaagaacccgatgagcgggccttctacgactcctaccgccagacctacgctgtcccagaggctttctaccccgacctcaaagccgctttcgacaacatcaacttcaatggctactccgattccaaccgcggtttctacaaggtctattctgacgttttcaacaggatttacgccagcgagcgtgcttttcaggaaaggaatgacctaccgcgcgtgggaatcggttcacaagcctccggacatggggaatctcgagagcccgtatcccgaggttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

158

Amino Acids

18.18

Weight (kDa)

5.11

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	214
AccII	CGCG	4 cut(s)	21, 327, 409, 411
AccIII	TCCGGA	1 cut(s)	434
AciI	CCGC	9 cut(s)	135, 156, 159, 214, 235, 282, 325, 327, 407
AcsI	RAATTY	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	183
AfiI	CCNNNNNNNGG	3 cut(s)	213, 413, 441
AgsI	TTSAA	2 cut(s)	304, 358
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	29
Ama87I	CYCGRG	2 cut(s)	450, 465
Aor13HI	TCCGGA	1 cut(s)	434
AoxI	GGCC	2 cut(s)	43, 216
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	421
AspLEI	GCGC	2 cut(s)	21, 411
AspS9I	GGNCC	1 cut(s)	216
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	2 cut(s)	450, 465
AxyI	CCTNAGG	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	4 cut(s)	136, 156, 159, 282
BlsI	GCNGC	4 cut(s)	137, 157, 160, 283
Bme1390I	CCNGG	1 cut(s)	113
BmeT110I	CYCGRG	2 cut(s)	450, 465
BmgT120I	GGNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	325, 466
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 413, 441
Bse1I	ACTGG	1 cut(s)	129
Bse21I	CCTNAGG	1 cut(s)	40
BseAI	TCCGGA	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	325, 466
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	3 cut(s)	213, 413, 441
BseNI	ACTGG	1 cut(s)	129
Bsh1236I	CGCG	4 cut(s)	21, 327, 409, 411
BshFI	GGCC	2 cut(s)	45, 218
BsiHKAI	GWGCWC	1 cut(s)	14
BsiHKCI	CYCGRG	2 cut(s)	450, 465
BsiSI	CCGG	2 cut(s)	113, 435
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	213, 413, 441
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	45, 218
Bso31I	GGTCTC	1 cut(s)	29
BsoBI	CYCGRG	2 cut(s)	450, 465
Bsp1286I	GDGCHC	2 cut(s)	14, 459
Bsp13I	TCCGGA	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	9 cut(s)	135, 156, 159, 214, 235, 282, 325, 327, 407
BspANI	GGCC	2 cut(s)	45, 218
BspEI	TCCGGA	1 cut(s)	434
BspFNI	CGCG	4 cut(s)	21, 327, 409, 411
BspQI	GCTCTTC	1 cut(s)	2
BspTNI	GGTCTC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	325, 466
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	216, 373, 377, 381
BstDEI	CTNAG	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	4 cut(s)	21, 327, 409, 411
BstHHI	GCGC	2 cut(s)	21, 411
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	4 cut(s)	21, 327, 409, 411
BstV2I	GAAGAC	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	45, 218
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	4 cut(s)	216, 373, 377, 381
CfoI	GCGC	2 cut(s)	21, 411
Cfr13I	GGNCC	1 cut(s)	216
Cfr42I	CCGCGG	1 cut(s)	328
CseI	GACGC	2 cut(s)	10, 191
CviAII	CATG	4 cut(s)	80, 89, 139, 440
CviJI	RGCY	8 cut(s)	45, 155, 218, 260, 281, 309, 431, 457
CviKI_1	RGCY	8 cut(s)	45, 155, 218, 260, 281, 309, 431, 457
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco147I	AGGCCT	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	40
Eco88I	CYCGRG	2 cut(s)	450, 465
EcoT38I	GRGCYC	1 cut(s)	459
FaeI	CATG	4 cut(s)	83, 92, 142, 443
FaiI	YATR	6 cut(s)	81, 90, 101, 106, 140, 441
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	4 cut(s)	79, 88, 138, 439
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	4 cut(s)	136, 156, 159, 282
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	4 cut(s)	136, 156, 159, 282
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	2 cut(s)	20, 410
GluI	GCNGC	4 cut(s)	136, 156, 159, 282
HaeIII	GGCC	2 cut(s)	45, 218
HapII	CCGG	2 cut(s)	113, 435
HgaI	GACGC	2 cut(s)	10, 191
HhaI	GCGC	2 cut(s)	21, 411
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	83, 92, 142, 443
Hin6I	GCGC	2 cut(s)	19, 409
HinP1I	GCGC	2 cut(s)	19, 409
HinfI	GANTC	4 cut(s)	227, 317, 417, 446
HpaII	CCGG	2 cut(s)	113, 435
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	3 cut(s)	77, 316, 349
Hpy188III	TCNNGA	5 cut(s)	389, 435, 450, 452, 465
Hpy8I	GTNNAC	1 cut(s)	425
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	83, 92, 142, 443
HspAI	GCGC	2 cut(s)	19, 409
Kpn2I	TCCGGA	1 cut(s)	434
KspI	CCGCGG	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	174
LguI	GCTCTTC	1 cut(s)	2
LpnPI	CCDG	8 cut(s)	126, 142, 251, 267, 346, 374, 385, 448
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	351
MalI	GATC	1 cut(s)	176
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	19, 158
MhlI	GDGCHC	2 cut(s)	14, 459
MluCI	AATT	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	5 cut(s)	56, 250, 284, 442, 461
MroI	TCCGGA	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	1 cut(s)	475
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	2 cut(s)	113, 435
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	4 cut(s)	21, 327, 409, 411
MwoI	GCNNNNNNNGC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	4 cut(s)	83, 92, 142, 443
NspI	RCATGY	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	450
PceI	AGGCCT	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	2
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	3 cut(s)	317, 417, 446
PkrI	GCNGC	4 cut(s)	137, 157, 160, 283
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	216
SacII	CCGCGG	1 cut(s)	328
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	475
SatI	GCNGC	4 cut(s)	136, 156, 159, 282
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	216
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	2 cut(s)	14, 459
SetI	ASST	7 cut(s)	41, 245, 276, 342, 354, 405, 472
Sfr274I	CTCGAG	1 cut(s)	450
Sfr303I	CCGCGG	1 cut(s)	328
SgrBI	CCGCGG	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	450
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	1 cut(s)	164
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	9 cut(s)	135, 156, 159, 214, 235, 282, 325, 327, 407
SspMI	CTAG	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	111
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	3 cut(s)	48, 288, 451
TasI	AATT	1 cut(s)	164
TauI	GCSGC	4 cut(s)	138, 158, 161, 284
TfiI	GAWTC	3 cut(s)	317, 417, 446
Tru1I	TTAA	1 cut(s)	475
Tru9I	TTAA	1 cut(s)	475
TspDTI	ATGAA	1 cut(s)	105
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.