Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019339

Physical Location & Seq

Genomic Coordinates Reverse (-)

22862665 .. 22863423

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18363

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCAATACAATTGGAACTGGTGGCAGCATGCGAAATTCGTAAGGGTTCTTTCAAGGATAGGCAACTAGTAGCAGTAAAGCGGCTGACTACCGGAACAAGAGATGAGAAAATTGCGGGCTTTCTATCTGAACTTGGCATTATAGCTCATTTGTCAGAGGGGATCCTCCATAGAGATATCAAGGCTGATAATATTCTACTGACACAGGATTTTGTGCTTCATATATGTGATTTTAGCAAAGTGGCTACAGCAACAATGACTCATCACAATGTTTTTAAGTTTAGGGTACATTTGGTTAGTTTGCTCCTGAATATTTTATGCATGGAAACATTTGATGTGTATTCTTTTGGGGTCCTGCTTTTGGAGCTTATAACTGGTCGTGCATCTTTGAATTATCTTCAGCAAAGCCTTGTTATTTGGGCAAGGCCCTTGCTTAATGCAAGTGACCTCAAGGAGCTTTTTGATCCTTATATTGGTATTGGTGACAACTATGACAGCACAGAGCTGGATCATACGGTGTTGACCTCATCTTTATGCATAGAACAGTCTGTTATTGTACGTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

188

Amino Acids

21.13

Weight (kDa)

5.76

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	50 - 130	2.3e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	53 - 135	8e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019339)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0353941 RchiOBHm_Chr4g0399951 RchiOBHm_Chr7g0205211
rosa_laevigata	RLG00000003393
rosa_multiflora	Rmu_sc0001072.1_g000010 Rmu_sc0009349.1_g000005
rosa_samantha	Rh1BG222300 Rh1DG249000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AciI	CCGC	2 cut(s)	82, 116
AclWI	GGATC	4 cut(s)	157, 170, 458, 516
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	2 cut(s)	288, 558
AfiI	CCNNNNNNNGG	2 cut(s)	361, 473
AgsI	TTSAA	2 cut(s)	55, 391
AhlI	ACTAGT	1 cut(s)	67
AluBI	AGCT	4 cut(s)	146, 367, 457, 505
AluI	AGCT	4 cut(s)	146, 367, 457, 505
AlwI	GGATC	4 cut(s)	157, 170, 458, 516
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	352, 426
AsuHPI	GGTGA	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	352
BamHI	GGATCC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	38
BcuI	ACTAGT	1 cut(s)	67
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	27, 83
BlsI	GCNGC	2 cut(s)	28, 84
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	352, 426
BmiI	GGNNCC	2 cut(s)	164, 353
BmsI	GCATC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 473
Bse1I	ACTGG	2 cut(s)	24, 379
BseLI	CCNNNNNNNGG	2 cut(s)	361, 473
BseNI	ACTGG	2 cut(s)	24, 379
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	361, 473
BsmFI	GGGAC	1 cut(s)	546
BsnI	GGCC	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	162, 463, 508
BspACI	CCGC	2 cut(s)	82, 116
BspANI	GGCC	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	164, 353
BspPI	GGATC	4 cut(s)	157, 170, 458, 516
BsrI	ACTGG	2 cut(s)	24, 379
BssMI	GATC	3 cut(s)	162, 463, 508
Bst4CI	ACNGT	2 cut(s)	517, 546
BstC8I	GCNNGC	2 cut(s)	31, 118
BstKTI	GATC	3 cut(s)	165, 466, 511
BstMBI	GATC	3 cut(s)	162, 463, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	427
Cac8I	GCNNGC	2 cut(s)	31, 118
Cfr13I	GGNCC	2 cut(s)	352, 426
Csp6I	GTAC	2 cut(s)	287, 557
CviAII	CATG	2 cut(s)	30, 322
CviQI	GTAC	2 cut(s)	287, 557
DpnI	GATC	3 cut(s)	164, 465, 510
DpnII	GATC	3 cut(s)	162, 463, 508
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	383
EcoO109I	RGGNCCY	2 cut(s)	352, 426
EcoRV	GATATC	1 cut(s)	178
EcoT22I	ATGCAT	2 cut(s)	323, 539
FaeI	CATG	2 cut(s)	33, 325
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	2 cut(s)	29, 321
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	27, 83
Fsp4HI	GCNGC	2 cut(s)	27, 83
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	2 cut(s)	27, 83
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	33, 325
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	2 cut(s)	130, 157
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	522
HpyCH4III	ACNGT	2 cut(s)	517, 546
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	4 cut(s)	321, 383, 440, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	2 cut(s)	33, 325
Kzo9I	GATC	3 cut(s)	162, 463, 508
LmnI	GCTCC	3 cut(s)	309, 364, 454
LpnPI	CCDG	7 cut(s)	5, 106, 191, 320, 360, 368, 491
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	2 cut(s)	443, 482
MalI	GATC	3 cut(s)	164, 465, 510
MboI	GATC	3 cut(s)	162, 463, 508
MboII	GAAGA	1 cut(s)	389
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	162
MluCI	AATT	4 cut(s)	11, 36, 111, 391
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	4 cut(s)	151, 176, 458, 535
Mph1103I	ATGCAT	2 cut(s)	323, 539
MseI	TTAA	2 cut(s)	276, 435
MslI	CAYNNNNRTG	3 cut(s)	225, 267, 532
MspI	CCGG	1 cut(s)	93
MunI	CAATTG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	364
NdeII	GATC	3 cut(s)	162, 463, 508
NlaIII	CATG	2 cut(s)	33, 325
NlaIV	GGNNCC	2 cut(s)	164, 353
NmuCI	GTSAC	2 cut(s)	443, 482
NsiI	ATGCAT	2 cut(s)	323, 539
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	28, 84
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	352
PsiI	TTATAA	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	164, 353
PspPI	GGNCC	2 cut(s)	352, 426
PspPPI	RGGWCCY	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	162
RsaI	GTAC	2 cut(s)	288, 558
RsaNI	GTAC	2 cut(s)	287, 557
RseI	CAYNNNNRTG	3 cut(s)	225, 267, 532
SaqAI	TTAA	2 cut(s)	276, 435
SatI	GCNGC	2 cut(s)	27, 83
Sau3AI	GATC	3 cut(s)	162, 463, 508
Sau96I	GGNCC	2 cut(s)	352, 426
SchI	GAGTC	1 cut(s)	253
SetI	ASST	7 cut(s)	148, 369, 450, 459, 507, 527, 562
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	3 cut(s)	225, 267, 532
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SpeI	ACTAGT	1 cut(s)	67
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	4 cut(s)	11, 36, 111, 391
SsiI	CCGC	2 cut(s)	82, 116
SspI	AATATT	2 cut(s)	193, 313
SspMI	CTAG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	517, 546
TaiI	ACGT	1 cut(s)	562
TasI	AATT	4 cut(s)	11, 36, 111, 391
TauI	GCSGC	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	276, 435
Tru9I	TTAA	2 cut(s)	276, 435
TseFI	GTSAC	2 cut(s)	443, 482
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	2 cut(s)	443, 482
TspDTI	ATGAA	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	1 cut(s)	68
Zsp2I	ATGCAT	2 cut(s)	323, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.