Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009349.1

Orthogroup ID

OG0019339

Physical Location & Seq

Genomic Coordinates Forward (+)

16926 .. 18753

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009349.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggaatataagatgaaaaatctgatgtgtattcttttgggggtcctagctttggagcttataactggtcttccagctttgaattatcttcagcaaagccttgttatttgggcaaggcccctgcttaaagcaaacgacctcaaggagcttgttaatccttatattggtattggtgacaactatgacagcacagagctggatcatatggtgtggactgcatctttatgcatagaacagtctcctattctacatcccctcatgagtcaggttgaggtactggaggtgacgagtgcaaagtttctcattaccgttggcttagatgatgatgatcaacgcattgaggttgattttgcagcttggttaatattgcagttcagaaagagcctcataagcctgagtcccatcggtcatgtatacatgtggaatttgacatctttgcaactggtatcaggtaagtttatgactttaacaactgcttttgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

161

Amino Acids

18.19

Weight (kDa)

4.76

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019339)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0353941 RchiOBHm_Chr4g0399951 RchiOBHm_Chr7g0205211
rosa_laevigata	RLG00000003393
rosa_multiflora	Rmu_sc0001072.1_g000010 Rmu_sc0009349.1_g000005
rosa_samantha	Rh1BG222300 Rh1DG249000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	414
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	52, 164
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	1 cut(s)	82
AluBI	AGCT	6 cut(s)	50, 58, 77, 148, 196, 356
AluI	AGCT	6 cut(s)	50, 58, 77, 148, 196, 356
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	43, 117
AsuHPI	GGTGA	2 cut(s)	185, 295
AvaII	GGWCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	410
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	43, 117
BmiI	GGNNCC	2 cut(s)	44, 119
BmsI	GCATC	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 164
Bse1I	ACTGG	3 cut(s)	70, 282, 447
Bse8I	GATNNNNATC	1 cut(s)	327
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	52, 164
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	3 cut(s)	70, 282, 447
BseXI	GCAGC	1 cut(s)	365
BshFI	GGCC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	52, 164
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	199, 328
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	44, 119
BspPI	GGATC	1 cut(s)	207
BsrI	ACTGG	3 cut(s)	70, 282, 447
BssMI	GATC	2 cut(s)	199, 328
BssNAI	GTATAC	1 cut(s)	415
Bst1107I	GTATAC	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	237, 310
BstDEI	CTNAG	2 cut(s)	316, 395
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	202, 331
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	2 cut(s)	199, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	62
BstZ17I	GTATAC	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	250
CciI	TCATGA	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	43, 117
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	3 cut(s)	259, 410, 418
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	2 cut(s)	316, 395
DpnI	GATC	2 cut(s)	201, 330
DpnII	GATC	2 cut(s)	199, 328
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	74
EcoO109I	RGGNCCY	2 cut(s)	43, 117
EcoT22I	ATGCAT	1 cut(s)	230
FaeI	CATG	3 cut(s)	262, 413, 421
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	3 cut(s)	258, 409, 417
FauNDI	CATATG	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	262, 413, 421
HinfI	GANTC	2 cut(s)	262, 397
HphI	GGTGA	2 cut(s)	185, 295
Hpy166II	GTNNAC	2 cut(s)	213, 415
Hpy188I	TCNGA	2 cut(s)	24, 377
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	2 cut(s)	213, 415
HpyCH4III	ACNGT	2 cut(s)	237, 310
HpyCH4V	TGCA	6 cut(s)	218, 228, 293, 353, 370, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	2 cut(s)	316, 395
Hsp92II	CATG	3 cut(s)	262, 413, 421
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	199, 328
LmnI	GCTCC	2 cut(s)	55, 145
LpnPI	CCDG	9 cut(s)	51, 87, 134, 182, 251, 263, 407, 428, 435
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	173, 283
MalI	GATC	2 cut(s)	201, 330
MboI	GATC	2 cut(s)	199, 328
MboII	GAAGA	2 cut(s)	62, 80
MluCI	AATT	2 cut(s)	82, 424
MlyI	GAGTC	2 cut(s)	271, 406
MnlI	CCTC	6 cut(s)	149, 265, 266, 274, 334, 395
Mph1103I	ATGCAT	1 cut(s)	230
MseI	TTAA	4 cut(s)	126, 153, 362, 467
MslI	CAYNNNNRTG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	390
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	2 cut(s)	199, 328
NlaIII	CATG	3 cut(s)	262, 413, 421
NlaIV	GGNNCC	2 cut(s)	44, 119
NmuCI	GTSAC	2 cut(s)	173, 283
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	1 cut(s)	421
PagI	TCATGA	1 cut(s)	258
PciI	ACATGT	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	2 cut(s)	270, 405
PpsI	GAGTC	2 cut(s)	270, 405
PpuMI	RGGWCCY	1 cut(s)	43
PscI	ACATGT	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	44, 119
PspPI	GGNCC	2 cut(s)	43, 117
PspPPI	RGGWCCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	223
SaqAI	TTAA	4 cut(s)	126, 153, 362, 467
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	2 cut(s)	199, 328
Sau96I	GGNCC	2 cut(s)	43, 117
SchI	GAGTC	2 cut(s)	271, 406
SfaNI	GCATC	1 cut(s)	227
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	82, 424
SspI	AATATT	1 cut(s)	366
SspMI	CTAG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	237, 310
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	2 cut(s)	82, 424
Tru1I	TTAA	4 cut(s)	126, 153, 362, 467
Tru9I	TTAA	4 cut(s)	126, 153, 362, 467
TseFI	GTSAC	2 cut(s)	173, 283
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	173, 283
TspDTI	ATGAA	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.