RchiOBHm_Chr7g0218511

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
36664858 .. 36668621
3764 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19561

Sequence Viewer

Length: 447 bp
ATGATGATTGAATTTGTTAAGAACTTGGCTGACTATGTCGCTGCCAGTGGAAAAAAGCATGAATATAACCCAAATCAGAGGTCTTGGAAGTATCTTAACACATTAGCGGAAGGCAATGCCATGCAGGAGGACAGCTTGTCCTTCGAAGGTGAATTTGAAGAAGAAGAAGAAGAATATTACTACCCAAGCTTCCCTTTCATAGCTCGCTTTTCTTGCTTCAAGGTGACTTGCTTACTATGCTACTGCTCAGAAGGAGACAACATACCTGATGCTTTCCATTTGGCTGAGGCAGCATGCAAGCTTTTGGGTCAAAGTCCCACTAATTTCCATGGATGCATCTTTGTCGCCAAATGCAAGTGTTCTTTGTTCAACGGTAATGATAAATGGTTTATTCCAATTTCTTGGAAGACTCTATATAGACCCCCAACAAATATGTCTCTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

17.07

Weight (kDa)

5.05

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022830)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218511
rosa_multiflora Rmu_sc0003337.1_g000014
rosa_wichuraiana Rw6G009660 Rw7G027190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AcsI RAATTY 2 cut(s) 11, 152
AgsI TTSAA 4 cut(s) 11, 158, 220, 370
AhdI GACNNNNNGTC 1 cut(s) 136
AluBI AGCT 4 cut(s) 135, 189, 203, 301
AluI AGCT 4 cut(s) 135, 189, 203, 301
Alw26I GTCTC 2 cut(s) 249, 441
ApeKI GCWGC 2 cut(s) 41, 290
ApoI RAATTY 2 cut(s) 11, 152
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsuHPI GGTGA 2 cut(s) 161, 235
AsuII TTCGAA 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 28, 302
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BcoDI GTCTC 2 cut(s) 249, 441
BisI GCNGC 2 cut(s) 42, 291
BlsI GCNGC 2 cut(s) 43, 292
BmeRI GACNNNNNGTC 1 cut(s) 136
BmsI GCATC 3 cut(s) 259, 323, 345
BpiI GAAGAC 1 cut(s) 413
Bpu10I CCTNAGC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 261, 276
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 28, 302
BslFI GGGAC 1 cut(s) 300
BsmAI GTCTC 2 cut(s) 249, 441
BsmFI GGGAC 1 cut(s) 300
Bsp119I TTCGAA 1 cut(s) 144
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 260, 277
BspT104I TTCGAA 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 205, 295, 299
BstDEI CTNAG 2 cut(s) 247, 285
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 1 cut(s) 338
BstMAI GTCTC 2 cut(s) 249, 441
BstMWI GCNNNNNNNGC 3 cut(s) 213, 237, 290
BstNSI RCATGY 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 28, 302
BstV2I GAAGAC 1 cut(s) 413
BstXI CCANNNNNNTGG 1 cut(s) 402
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 3 cut(s) 205, 295, 299
CviAII CATG 4 cut(s) 59, 121, 294, 329
CviJI RGCY 6 cut(s) 29, 135, 189, 203, 284, 301
CviKI_1 RGCY 6 cut(s) 29, 135, 189, 203, 284, 301
DdeI CTNAG 2 cut(s) 247, 285
DriI GACNNNNNGTC 1 cut(s) 136
Eam1105I GACNNNNNGTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 4 cut(s) 62, 124, 297, 332
FalI AAGNNNNNCTT 2 cut(s) 178, 210
FaqI GGGAC 1 cut(s) 300
FatI CATG 4 cut(s) 58, 120, 293, 328
Fnu4HI GCNGC 2 cut(s) 42, 291
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 42, 291
GluI GCNGC 2 cut(s) 42, 291
Hin1II CATG 4 cut(s) 62, 124, 297, 332
HindIII AAGCTT 2 cut(s) 187, 299
HinfI GANTC 1 cut(s) 409
HphI GGTGA 2 cut(s) 161, 235
Hpy188I TCNGA 2 cut(s) 78, 250
HpyAV CCTTC 4 cut(s) 104, 140, 151, 245
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4V TGCA 4 cut(s) 124, 297, 336, 354
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 237, 290
HpyF3I CTNAG 2 cut(s) 247, 285
Hsp92II CATG 4 cut(s) 62, 124, 297, 332
LpnPI CCDG 3 cut(s) 58, 110, 279
Lsp1109I GCAGC 2 cut(s) 28, 302
LweI GCATC 3 cut(s) 259, 323, 345
MaeIII GTNAC 1 cut(s) 223
MboII GAAGA 6 cut(s) 170, 173, 176, 179, 182, 418
MluCI AATT 4 cut(s) 11, 152, 322, 396
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 3 cut(s) 72, 121, 280
Mph1103I ATGCAT 1 cut(s) 338
MseI TTAA 2 cut(s) 18, 96
MwoI GCNNNNNNNGC 3 cut(s) 213, 237, 290
NcoI CCATGG 1 cut(s) 328
NlaIII CATG 4 cut(s) 62, 124, 297, 332
NmuCI GTSAC 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 338
NspI RCATGY 1 cut(s) 297
NspV TTCGAA 1 cut(s) 144
PaeI GCATGC 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 43, 292
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PsyI GACNNNGTC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 18, 96
SatI GCNGC 2 cut(s) 42, 291
SchI GAGTC 1 cut(s) 403
SetI ASST 8 cut(s) 83, 137, 151, 191, 205, 225, 268, 303
SfaNI GCATC 3 cut(s) 259, 323, 345
SfuI TTCGAA 1 cut(s) 144
SphI GCATGC 1 cut(s) 297
Sse9I AATT 4 cut(s) 11, 152, 322, 396
SsiI CCGC 1 cut(s) 107
SspI AATATT 1 cut(s) 176
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 1 cut(s) 144
TasI AATT 4 cut(s) 11, 152, 322, 396
Tru1I TTAA 2 cut(s) 18, 96
Tru9I TTAA 2 cut(s) 18, 96
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 41, 290
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 75, 187
TspRI CASTG 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 35
XapI RAATTY 2 cut(s) 11, 152
XceI RCATGY 1 cut(s) 297
Zsp2I ATGCAT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.