Rw7G027190

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0022830
Physical Location & Seq
Reverse (-)
35001834 .. 35008813
6980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027190.1

Sequence Viewer

Length: 804 bp
ATGCGTCAGCAACCCACAATAGAAACAGAAATGTGGGAGCCGCTCATAATCAAGATCAAAACTCTTCCTCTCCAACCACCCCGCCGGCAGGTAACCCCACAACCCTTAATAGCACGCACAAAAACTCCAATCTCCTGTCCCAGCAGCCTCCCCGTATTGTCCAACGATTTCTCCTCCAGGTATATTGGTGGAAGGCCCTGGATACGAATCCAGAAGTATTGTCGAACAACACCCTGCCACCCCCTAGCTATGTTGCCACGATCCTCCCTCGATCCGGGGATGATGATTGAATTTGTTAATAACTTGGCTGACTATGTCGCTGCCAGTGGAAAAAAGCACGTCATTGTGCTTTCAAGTTTAGACTTTGGGAAATGCGGTTCGCAGATGCATTATCTGTCTCGCACCAATTCTAATGGAACAGATAATTACTGTGAACAACTTGGGTCTCGGAAGTATCTTAACACATTAGCGGAAGGCAATGCCATGCAGGAGGACAGCTTGTCCTTTGAAGGTGAATTTGAAGAAGAAGAAGAATATTACTATCCAAGCTTGCCTTTCATAGCTCGCTTTTCTTGCTTCAGTAAAAAGTATGACTGGGCTACGGAATTGAAGGTGACTTGCTTACTATGCTACTGCTCAGAAGGAGACAACATACCTGATGCTTTCCATTTGGCTGAGGCAGCATGCAAGCTTTTGGATCAGAGTCCCACTAATTTCCATGGTCACAACGGTAATGATAAATGGTTTATTCCAATTTCTTGGAAGACTCTATATAGACCCCCAACATATATGTCTCTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

267

Amino Acids

30.52

Weight (kDa)

6.59

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022830)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218511
rosa_multiflora Rmu_sc0003337.1_g000014
rosa_wichuraiana Rw6G009660 Rw7G027190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 43
AciI CCGC 4 cut(s) 41, 82, 375, 470
AclWI GGATC 3 cut(s) 255, 266, 705
AcsI RAATTY 2 cut(s) 290, 515
AcuI CTGAAG 1 cut(s) 562
AfiI CCNNNNNNNGG 2 cut(s) 88, 274
AgsI TTSAA 5 cut(s) 290, 354, 509, 521, 610
AhdI GACNNNNNGTC 1 cut(s) 499
AjiI CACGTC 1 cut(s) 340
AjnI CCWGG 2 cut(s) 176, 197
AloI GAACNNNNNNTCC 2 cut(s) 361, 393
AluBI AGCT 5 cut(s) 248, 498, 549, 563, 691
AluI AGCT 5 cut(s) 248, 498, 549, 563, 691
Alw26I GTCTC 4 cut(s) 402, 450, 639, 798
AlwI GGATC 3 cut(s) 255, 266, 705
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 144, 320, 680
ApoI RAATTY 2 cut(s) 290, 515
AspS9I GGNCC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 524, 625
BbsI GAAGAC 1 cut(s) 770
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 3 cut(s) 156, 307, 692
BciT130I CCWGG 2 cut(s) 178, 199
BciVI GTATCC 1 cut(s) 195
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 4 cut(s) 402, 450, 639, 798
BfaI CTAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 79
BfuI GTATCC 1 cut(s) 195
BisI GCNGC 4 cut(s) 41, 145, 321, 681
BlsI GCNGC 4 cut(s) 42, 146, 322, 682
Bme1390I CCNGG 3 cut(s) 178, 199, 276
BmeRI GACNNNNNGTC 1 cut(s) 499
BmgBI CACGTC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 3 cut(s) 178, 199, 276
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 2 cut(s) 375, 649
BmuI ACTGGG 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 770
BpmI CTGGAG 1 cut(s) 160
Bpu10I CCTNAGC 1 cut(s) 675
BpuMI CCSGG 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 450
BsaJI CCNNGG 3 cut(s) 197, 275, 718
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 274
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 324, 599
Bse3DI GCAATG 1 cut(s) 484
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 2 cut(s) 178, 199
BseDI CCNNGG 3 cut(s) 197, 275, 718
BseGI GGATG 1 cut(s) 285
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 88, 274
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 651, 666
BseNI ACTGG 2 cut(s) 324, 599
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 3 cut(s) 156, 307, 692
BseYI CCCAGC 1 cut(s) 140
BshFI GGCC 1 cut(s) 196
BsiSI CCGG 2 cut(s) 85, 275
BslFI GGGAC 2 cut(s) 123, 690
BslI CCNNNNNNNGG 2 cut(s) 88, 274
BsmAI GTCTC 4 cut(s) 402, 450, 639, 798
BsmFI GGGAC 2 cut(s) 123, 690
BsnI GGCC 1 cut(s) 196
Bso31I GGTCTC 1 cut(s) 450
Bsp143I GATC 4 cut(s) 54, 260, 271, 697
Bsp19I CCATGG 1 cut(s) 718
BspACI CCGC 4 cut(s) 41, 82, 375, 470
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 650, 667
BspLI GGNNCC 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 3 cut(s) 255, 266, 705
BspTNI GGTCTC 1 cut(s) 450
BsrBI CCGCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 484
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 2 cut(s) 324, 599
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 3 cut(s) 197, 275, 718
BssMI GATC 4 cut(s) 54, 260, 271, 697
BssT1I CCWWGG 1 cut(s) 718
Bst2UI CCWGG 2 cut(s) 178, 199
Bst4CI ACNGT 2 cut(s) 431, 731
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 6 cut(s) 86, 115, 551, 565, 685, 689
BstDEI CTNAG 2 cut(s) 637, 675
BstDSI CCRYGG 1 cut(s) 718
BstEII GGTNACC 1 cut(s) 91
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 4 cut(s) 57, 263, 274, 700
BstMAI GTCTC 4 cut(s) 402, 450, 639, 798
BstMBI GATC 4 cut(s) 54, 260, 271, 697
BstMWI GCNNNNNNNGC 3 cut(s) 573, 627, 680
BstNI CCWGG 2 cut(s) 178, 199
BstNSI RCATGY 1 cut(s) 687
BstPI GGTNACC 1 cut(s) 91
BstSCI CCNGG 3 cut(s) 176, 197, 274
BstV1I GCAGC 3 cut(s) 156, 307, 692
BstV2I GAAGAC 1 cut(s) 770
BstXI CCANNNNNNTGG 1 cut(s) 759
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 718
BtrI CACGTC 1 cut(s) 340
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 331
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 6 cut(s) 86, 115, 551, 565, 685, 689
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 195
CviAII CATG 3 cut(s) 484, 684, 719
DdeI CTNAG 2 cut(s) 637, 675
DpnI GATC 4 cut(s) 56, 262, 273, 699
DpnII GATC 4 cut(s) 54, 260, 271, 697
DriI GACNNNNNGTC 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 69
Eam1105I GACNNNNNGTC 1 cut(s) 499
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 562
Eco91I GGTNACC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 195
EcoO65I GGTNACC 1 cut(s) 91
EcoRII CCWGG 2 cut(s) 176, 197
EcoT14I CCWWGG 1 cut(s) 718
EcoT22I ATGCAT 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 3 cut(s) 487, 687, 722
FalI AAGNNNNNCTT 2 cut(s) 538, 570
FaqI GGGAC 2 cut(s) 123, 690
FatI CATG 3 cut(s) 483, 683, 718
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 4 cut(s) 41, 145, 321, 681
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 4 cut(s) 41, 145, 321, 681
FspBI CTAG 1 cut(s) 245
GluI GCNGC 4 cut(s) 41, 145, 321, 681
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 160
HaeIII GGCC 1 cut(s) 196
HapII CCGG 2 cut(s) 85, 275
Hin1II CATG 3 cut(s) 487, 687, 722
HindIII AAGCTT 2 cut(s) 547, 689
HinfI GANTC 3 cut(s) 207, 703, 766
HpaII CCGG 2 cut(s) 85, 275
HphI GGTGA 2 cut(s) 524, 625
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 3 cut(s) 450, 640, 702
Hpy188III TCNNGA 2 cut(s) 52, 211
Hpy8I GTNNAC 1 cut(s) 434
HpyAV CCTTC 5 cut(s) 186, 467, 503, 604, 635
HpyCH4III ACNGT 2 cut(s) 431, 731
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 388, 487, 687
HpyF10VI GCNNNNNNNGC 3 cut(s) 573, 627, 680
HpyF3I CTNAG 2 cut(s) 637, 675
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 3 cut(s) 487, 687, 722
KroI GCCGGC 1 cut(s) 84
KroNI GCCGGC 1 cut(s) 86
Kzo9I GATC 4 cut(s) 54, 260, 271, 697
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 3 cut(s) 156, 307, 692
LweI GCATC 2 cut(s) 375, 649
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 3 cut(s) 91, 613, 722
MalI GATC 4 cut(s) 56, 262, 273, 699
MbiI CCGCTC 1 cut(s) 43
MboI GATC 4 cut(s) 54, 260, 271, 697
MboII GAAGA 6 cut(s) 56, 533, 536, 539, 542, 775
MluCI AATT 7 cut(s) 290, 406, 424, 515, 605, 712, 753
MlyI GAGTC 2 cut(s) 712, 760
MmeI TCCRAC 2 cut(s) 97, 186
MnlI CCTC 7 cut(s) 78, 158, 184, 274, 278, 484, 670
Mph1103I ATGCAT 1 cut(s) 390
MroNI GCCGGC 1 cut(s) 84
MseI TTAA 3 cut(s) 107, 297, 459
MspI CCGG 2 cut(s) 85, 275
MspR9I CCNGG 3 cut(s) 178, 199, 276
MvaI CCWGG 2 cut(s) 178, 199
MwoI GCNNNNNNNGC 3 cut(s) 573, 627, 680
NaeI GCCGGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 276
NcoI CCATGG 1 cut(s) 718
NdeII GATC 4 cut(s) 54, 260, 271, 697
NgoMIV GCCGGC 1 cut(s) 84
NlaIII CATG 3 cut(s) 487, 687, 722
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 613, 722
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 687
PaeI GCATGC 1 cut(s) 687
PdiI GCCGGC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 207
PflFI GACNNNGTC 1 cut(s) 314
PkrI GCNGC 4 cut(s) 42, 146, 322, 682
PleI GAGTC 2 cut(s) 711, 760
PpsI GAGTC 2 cut(s) 711, 760
Psp6I CCWGG 2 cut(s) 176, 197
PspEI GGTNACC 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 2 cut(s) 176, 197
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 314
SaqAI TTAA 3 cut(s) 107, 297, 459
SatI GCNGC 4 cut(s) 41, 145, 321, 681
Sau3AI GATC 4 cut(s) 54, 260, 271, 697
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 2 cut(s) 712, 760
ScrFI CCNGG 3 cut(s) 178, 199, 276
SfaNI GCATC 2 cut(s) 375, 649
SphI GCATGC 1 cut(s) 687
Sse9I AATT 7 cut(s) 290, 406, 424, 515, 605, 712, 753
SsiI CCGC 4 cut(s) 41, 82, 375, 470
SspI AATATT 1 cut(s) 536
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 3 cut(s) 176, 197, 274
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 2 cut(s) 431, 731
TaiI ACGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 223, 270
TasI AATT 7 cut(s) 290, 406, 424, 515, 605, 712, 753
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 3 cut(s) 107, 297, 459
Tru9I TTAA 3 cut(s) 107, 297, 459
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 2 cut(s) 613, 722
TseI GCWGC 3 cut(s) 144, 320, 680
Tsp45I GTSAC 2 cut(s) 613, 722
TspDTI ATGAA 1 cut(s) 547
TspGWI ACGGA 1 cut(s) 617
TspRI CASTG 1 cut(s) 331
Tth111I GACNNNGTC 1 cut(s) 314
XapI RAATTY 2 cut(s) 290, 515
XceI RCATGY 1 cut(s) 687
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.