Rmu_sc0003337.1_g000014

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003337.1
OG0022830
Physical Location & Seq
Forward (+)
34207 .. 35657
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003337.1_g000014.1.cds

Sequence Viewer

Length: 297 bp
atgccagagaacagcttaccttttgaagatgaattggaagaagaagaatactgctacccaagcttgcctttttcagctctcttttcttccttaaaggcaaaaggattgaaggtcacctgtttattatgctactgctcagaaggagacaacacacctgatgctttccatttggctgaagcagcatgcaaacttctgggtgtgagtcccagtaatttccatggcaacactgataattggtttattccaatttcttggaagactgtgtatggaccacccacagacatgtctctcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC2

Protein Analysis

98

Amino Acids

10.92

Weight (kDa)

4.32

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022830)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218511
rosa_multiflora Rmu_sc0003337.1_g000014
rosa_wichuraiana Rw6G009660 Rw7G027190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 2 cut(s) 26, 109
AluBI AGCT 3 cut(s) 15, 63, 77
AluI AGCT 3 cut(s) 15, 63, 77
Alw26I GTCTC 2 cut(s) 138, 291
ApeKI GCWGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 138, 291
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 191
BslFI GGGAC 1 cut(s) 189
BsmAI GTCTC 2 cut(s) 138, 291
BsmFI GGGAC 1 cut(s) 189
Bsp19I CCATGG 1 cut(s) 217
BspCNI CTCAG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 65, 184
BstDEI CTNAG 1 cut(s) 136
BstDSI CCRYGG 1 cut(s) 217
BstEII GGTNACC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 138, 291
BstMWI GCNNNNNNNGC 2 cut(s) 60, 179
BstNSI RCATGY 2 cut(s) 186, 286
BstPI GGTNACC 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 65, 184
Cfr13I GGNCC 1 cut(s) 269
CviAII CATG 3 cut(s) 183, 218, 283
CviJI RGCY 4 cut(s) 15, 63, 77, 173
CviKI_1 RGCY 4 cut(s) 15, 63, 77, 173
DdeI CTNAG 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 195
Eco91I GGTNACC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 3 cut(s) 186, 221, 286
FaiI YATR 5 cut(s) 127, 184, 219, 267, 284
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 1 cut(s) 189
FatI CATG 3 cut(s) 182, 217, 282
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 180
Hin1II CATG 3 cut(s) 186, 221, 286
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 1 cut(s) 202
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 103, 134
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 179
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 3 cut(s) 186, 221, 286
LpnPI CCDG 5 cut(s) 18, 130, 168, 179, 220
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 112
MboII GAAGA 6 cut(s) 38, 50, 53, 56, 78, 268
MluCI AATT 4 cut(s) 32, 211, 232, 246
MlyI GAGTC 1 cut(s) 211
MseI TTAA 2 cut(s) 92, 295
MslI CAYNNNNRTG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 60, 179
NcoI CCATGG 1 cut(s) 217
NlaIII CATG 3 cut(s) 186, 221, 286
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 2 cut(s) 186, 286
PaeI GCATGC 1 cut(s) 186
PciI ACATGT 1 cut(s) 282
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PscI ACATGT 1 cut(s) 282
PspEI GGTNACC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 2 cut(s) 92, 295
SatI GCNGC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 211
SetI ASST 7 cut(s) 17, 22, 65, 79, 114, 119, 157
SfaNI GCATC 1 cut(s) 148
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 281
SphI GCATGC 1 cut(s) 186
Sse9I AATT 4 cut(s) 32, 211, 232, 246
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 262
TasI AATT 4 cut(s) 32, 211, 232, 246
Tru1I TTAA 2 cut(s) 92, 295
Tru9I TTAA 2 cut(s) 92, 295
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 269
XceI RCATGY 2 cut(s) 186, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.