Rw6G009660

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
16211119 .. 16212590
1472 bp
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UTR
Exon/CDS
Intron
Rw6G009660.1

Sequence Viewer

Length: 237 bp
ATGCCAGAGAACAGCTTACCTTTTGAAGATGAATTGGAAGAAGAAGAATACTACTACCCAAGCTTGCCTTTTTCAGCTCTCTTTTCTTCCTTAAAGGCAAAAGGATTGAAGGTCACCTGTTTATTATGCTACTGCTCAGAAGGAGACAACACACTTGATGCTTTCCATTTGGCTGAAGCAGCATGCAAACTTCTGGGTGTGAGTCCCAGTAATTTCCATGGTATAGGATTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.61

Weight (kDa)

4.37

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022830)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0218511
rosa_multiflora Rmu_sc0003337.1_g000014
rosa_wichuraiana Rw6G009660 Rw7G027190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 195
AgsI TTSAA 2 cut(s) 26, 109
AluBI AGCT 3 cut(s) 15, 63, 77
AluI AGCT 3 cut(s) 15, 63, 77
Alw26I GTCTC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 106
BbvI GCAGC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 138
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 191
BslFI GGGAC 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 189
Bsp19I CCATGG 1 cut(s) 217
BspCNI CTCAG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 65, 184
BstDEI CTNAG 1 cut(s) 136
BstDSI CCRYGG 1 cut(s) 217
BstEII GGTNACC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 186
BstPI GGTNACC 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 217
Cac8I GCNNGC 2 cut(s) 65, 184
CviAII CATG 2 cut(s) 183, 218
CviJI RGCY 4 cut(s) 15, 63, 77, 173
CviKI_1 RGCY 4 cut(s) 15, 63, 77, 173
DdeI CTNAG 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 195
Eco91I GGTNACC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 2 cut(s) 186, 221
FaiI YATR 4 cut(s) 127, 184, 219, 224
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 182, 217
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 186, 221
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 2 cut(s) 202, 228
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 139, 236
HpyAV CCTTC 2 cut(s) 103, 134
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 2 cut(s) 186, 221
LpnPI CCDG 4 cut(s) 18, 130, 179, 220
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 112
MboII GAAGA 5 cut(s) 38, 50, 53, 56, 78
MluCI AATT 2 cut(s) 32, 211
MlyI GAGTC 1 cut(s) 211
MseI TTAA 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 179
NcoI CCATGG 1 cut(s) 217
NlaIII CATG 2 cut(s) 186, 221
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 186
PaeI GCATGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 180
SchI GAGTC 1 cut(s) 211
SetI ASST 6 cut(s) 17, 22, 65, 79, 114, 119
SfaNI GCATC 1 cut(s) 148
SgeI CNNG 9 cut(s) 17, 72, 76, 129, 167, 195, 206, 219, 230
SphI GCATGC 1 cut(s) 186
Sse9I AATT 2 cut(s) 32, 211
StyI CCWWGG 1 cut(s) 217
TasI AATT 2 cut(s) 32, 211
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 45
XceI RCATGY 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.