RLG00000000197

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Unknown
OG0023017
Physical Location & Seq
Forward (+)
901781 .. 903044
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000197

Sequence Viewer

Length: 657 bp
ATGGTTAATGGTAAGGAGCAGGAGGTTGGCCTGAAAAACTGCAAAACTGGGGCTTTTTTATGGCATCGATACCCGACCATCTACCTCAGCTACAAGCTTACAACTGATTCTCTCTGTTTTTCTCGGTGTCCAGAACCTCTATCTCAACAACAACCTATTCAAGGGTCAGGTCCGACTGCAGAGATTCCGACGATGATTCAGATCAATTCGACTGTGGAGATTCCCCTTAGCAGCTTGTTGTGTCTGCAGTACAACTGCATGGTCTCGCCGGTGGAGACGCCGTGCCGGTTAAAGTCCGGGATGCAGAAGATGAGGCCTACTGCGCAATGTTCTCGGTTCCGGTTCTCGTCGGTTCCGGCACTGTTAACTACAACAACCGAACAGAAGTTCCCTTTTAGGTTTCGATTCCGGTTCCGGCAAATTTTACATTTTCAGAACCGATCCCAGCCCTATTCTCCACTATGCCAGCTCCAGCAACTCAGATTCAGCCGCAAAAGAGTAAGGGTGCACAGCTCAGGTAAGCTCGACTCCAGTAATAACACACCTTGGCCAAAGACCAAACCTCCACCTCCAACCCCGTGGAAATGCCTTGAACTCGAACAAGCCACCAATAATCCAACCCTTATACCCACTGGACATCAATTCCAGATCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006833 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009798 GO:0009888 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010087 GO:0010103 GO:0010148 GO:0010229 GO:0010286 GO:0010374 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0022603 GO:0023052 GO:0030155 GO:0032501 GO:0032502 GO:0033218 GO:0033554 GO:0033612 GO:0034605 GO:0036211 GO:0038023 GO:0040008 GO:0042044 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048281 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065001 GO:0065007 GO:0070370 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:1905421 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

219

Amino Acids

25.02

Weight (kDa)

9.85

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023017)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000197
rosa_samantha Rh6CG013500 Rh6DG014800 Rh7DG371900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 324
AciI CCGC 1 cut(s) 490
AclWI GGATC 1 cut(s) 435
AcoI YGGCCR 1 cut(s) 548
AcsI RAATTY 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 2 cut(s) 161, 593
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 6 cut(s) 90, 97, 234, 469, 513, 523
AluI AGCT 6 cut(s) 90, 97, 234, 469, 513, 523
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 2 cut(s) 268, 269
Alw44I GTGCAC 1 cut(s) 506
AlwI GGATC 1 cut(s) 435
AoxI GGCC 3 cut(s) 28, 314, 548
ApaLI GTGCAC 1 cut(s) 506
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 420
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 643
AvaII GGWCC 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 510
BalI TGGCCA 1 cut(s) 550
Bbv12I GWGCWC 1 cut(s) 510
BbvCI CCTCAGC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 243
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 268, 269
BfmI CTRYAG 2 cut(s) 177, 245
BisI GCNGC 2 cut(s) 232, 490
BlsI GCNGC 2 cut(s) 233, 491
Bme1390I CCNGG 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 3 cut(s) 338, 354, 413
BmrFI CCNGG 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 73, 291
BmuI ACTGGG 1 cut(s) 57
BpmI CTGGAG 2 cut(s) 455, 514
Bpu10I CCTNAGC 3 cut(s) 86, 227, 514
BpuMI CCSGG 1 cut(s) 298
Bsa29I ATCGAT 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 545, 578
BsaWI WCCGGW 2 cut(s) 339, 408
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 547, 577
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 2 cut(s) 268, 285
Bse1I ACTGG 3 cut(s) 52, 531, 637
Bse3DI GCAATG 1 cut(s) 332
Bse8I GATNNNNATC 1 cut(s) 200
BseCI ATCGAT 1 cut(s) 67
BseDI CCNNGG 2 cut(s) 545, 578
BseGI GGATG 1 cut(s) 306
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 3 cut(s) 100, 493, 528
BseNI ACTGG 3 cut(s) 52, 531, 637
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 444
BshFI GGCC 3 cut(s) 30, 316, 550
BshVI ATCGAT 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 510
BsiSI CCGG 7 cut(s) 269, 286, 297, 340, 356, 409, 415
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 268, 269
BsmBI CGTCTC 1 cut(s) 269
BsnI GGCC 3 cut(s) 30, 316, 550
Bso31I GGTCTC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 3 cut(s) 201, 440, 648
BspACI CCGC 1 cut(s) 490
BspANI GGCC 3 cut(s) 30, 316, 550
BspCNI CTCAG 3 cut(s) 99, 492, 527
BspDI ATCGAT 1 cut(s) 67
BspLI GGNNCC 3 cut(s) 338, 354, 413
BspMAI CTGCAG 2 cut(s) 181, 249
BspPI GGATC 1 cut(s) 435
BspTNI GGTCTC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 332
BsrFI RCCGGY 2 cut(s) 268, 285
BsrI ACTGG 3 cut(s) 52, 531, 637
BssAI RCCGGY 2 cut(s) 268, 285
BssECI CCNNGG 2 cut(s) 545, 578
BssMI GATC 3 cut(s) 201, 440, 648
BssNI GRCGYC 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 545
Bst4CI ACNGT 2 cut(s) 214, 363
BstACI GRCGYC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 4 cut(s) 86, 227, 479, 514
BstDSI CCRYGG 1 cut(s) 578
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 306
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 3 cut(s) 204, 443, 651
BstMAI GTCTC 2 cut(s) 268, 269
BstMBI GATC 3 cut(s) 201, 440, 648
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 296
BstSFI CTRYAG 2 cut(s) 177, 245
BstSLI GKGCMC 1 cut(s) 510
BstV1I GCAGC 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 579
Bsu15I ATCGAT 1 cut(s) 67
BsuRI GGCC 3 cut(s) 30, 316, 550
BsuTUI ATCGAT 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 578
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 359, 630
Cac8I GCNNGC 1 cut(s) 467
CfoI GCGC 1 cut(s) 325
Cfr10I RCCGGY 2 cut(s) 268, 285
Cfr13I GGNCC 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 67
CseI GACGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 259
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 4 cut(s) 86, 227, 479, 514
DpnI GATC 3 cut(s) 203, 442, 650
DpnII GATC 3 cut(s) 201, 440, 648
EaeI YGGCCR 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 545
Eco147I AGGCCT 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 545
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 1 cut(s) 262
FaiI YATR 4 cut(s) 61, 260, 463, 626
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 232, 490
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 2 cut(s) 232, 490
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 1 cut(s) 324
GluI GCNGC 2 cut(s) 232, 490
GsaI CCCAGC 1 cut(s) 448
GsuI CTGGAG 2 cut(s) 455, 514
HaeIII GGCC 3 cut(s) 30, 316, 550
HapII CCGG 7 cut(s) 269, 286, 297, 340, 356, 409, 415
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 7 cut(s) 107, 184, 196, 220, 405, 483, 527
HpaI GTTAAC 1 cut(s) 366
HpaII CCGG 7 cut(s) 269, 286, 297, 340, 356, 409, 415
HphI GGTGA 1 cut(s) 643
Hpy166II GTNNAC 2 cut(s) 366, 508
Hpy188I TCNGA 5 cut(s) 174, 189, 201, 435, 482
Hpy188III TCNNGA 2 cut(s) 131, 646
Hpy8I GTNNAC 2 cut(s) 366, 508
Hpy99I CGWCG 2 cut(s) 193, 352
HpyCH4III ACNGT 2 cut(s) 214, 363
HpyCH4V TGCA 6 cut(s) 42, 179, 247, 258, 304, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 4 cut(s) 86, 227, 479, 514
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 323
KspAI GTTAAC 1 cut(s) 366
Kzo9I GATC 3 cut(s) 201, 440, 648
LmnI GCTCC 2 cut(s) 16, 474
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 2 cut(s) 73, 291
MalI GATC 3 cut(s) 203, 442, 650
MboI GATC 3 cut(s) 201, 440, 648
MboII GAAGA 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 510
MlsI TGGCCA 1 cut(s) 550
MluCI AATT 3 cut(s) 205, 420, 641
MluNI TGGCCA 1 cut(s) 550
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 4 cut(s) 197, 212, 596, 641
MnlI CCTC 6 cut(s) 16, 95, 147, 306, 573, 579
Mox20I TGGCCA 1 cut(s) 550
MscI TGGCCA 1 cut(s) 550
MseI TTAA 3 cut(s) 6, 290, 365
Msp20I TGGCCA 1 cut(s) 550
MspI CCGG 7 cut(s) 269, 286, 297, 340, 356, 409, 415
MspR9I CCNGG 1 cut(s) 298
MwoI GCNNNNNNNGC 1 cut(s) 322
NciI CCSGG 1 cut(s) 298
NdeII GATC 3 cut(s) 201, 440, 648
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 3 cut(s) 338, 354, 413
NsbI TGCGCA 1 cut(s) 324
PceI AGGCCT 1 cut(s) 316
PfeI GAWTC 6 cut(s) 107, 184, 196, 220, 405, 483
PfoI TCCNGGA 1 cut(s) 296
PkrI GCNGC 2 cut(s) 233, 491
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PspFI CCCAGC 1 cut(s) 444
PspN4I GGNNCC 3 cut(s) 338, 354, 413
PspPI GGNCC 1 cut(s) 170
PstI CTGCAG 2 cut(s) 181, 249
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 3 cut(s) 6, 290, 365
SatI GCNGC 2 cut(s) 232, 490
Sau3AI GATC 3 cut(s) 201, 440, 648
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 1 cut(s) 510
SfaNI GCATC 2 cut(s) 73, 291
SfcI CTRYAG 2 cut(s) 177, 245
SgrAI CRCCGGYG 1 cut(s) 268
SinI GGWCC 1 cut(s) 170
Sse9I AATT 3 cut(s) 205, 420, 641
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 1 cut(s) 490
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 2 cut(s) 214, 363
TaqI TCGA 5 cut(s) 67, 209, 403, 525, 597
TasI AATT 3 cut(s) 205, 420, 641
TatI WGTACW 1 cut(s) 249
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 6 cut(s) 107, 184, 196, 220, 405, 483
Tru1I TTAA 3 cut(s) 6, 290, 365
Tru9I TTAA 3 cut(s) 6, 290, 365
TscAI CASTG 2 cut(s) 366, 637
TseI GCWGC 1 cut(s) 231
TspRI CASTG 2 cut(s) 366, 637
VneI GTGCAC 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 159
XapI RAATTY 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.