Rh6CG013500

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0023017
Physical Location & Seq
Forward (+)
1514226 .. 1516649
2424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG013500.1

Sequence Viewer

Length: 420 bp
ATGGGTCCTTCAATTATGGGGTTCCGCCCTTTACTCCTCAAATGGAGGGCTGTGGGGATATTTTCTTCCCCAATAGGGTGCCCCGGCGTGATGTTCCGGAAGAGGGTCAAACCCGATGGAACCGATACCCGTAGTCAAACCCTCGAATCATATTTCAATCACCCGACCATCGACCTCAACTACAACCGATTCTCGCCGATGTTCTCACCGTCCAGAACCTCTACCTCAACAACAACCGGTTCAAGGTCAGGTCCGACTGCAGAGATTCAGACGAGGATTCAGATTAATCCGACCGCGGAGATTCCCATGAGCAGCTCGTTGTGTTTGCAGTACAACTGCATGGTCCCATCGGTGGAGACGCCATGTCTGTTGAAGTCCGATATGCAGAAGACGAGGCCTACTACGCAGTGTAACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006833 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009798 GO:0009888 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010087 GO:0010103 GO:0010148 GO:0010229 GO:0010286 GO:0010374 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0022603 GO:0023052 GO:0030155 GO:0032501 GO:0032502 GO:0033218 GO:0033554 GO:0033612 GO:0034605 GO:0036211 GO:0038023 GO:0040008 GO:0042044 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048281 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065001 GO:0065007 GO:0070370 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:1905421 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

139

Amino Acids

15.46

Weight (kDa)

9.36

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023017)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000197
rosa_samantha Rh6CG013500 Rh6DG014800 Rh7DG371900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 78
AccII CGCG 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 3 cut(s) 25, 294, 296
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 4 cut(s) 75, 103, 243, 352
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 4 cut(s) 12, 157, 243, 373
AhdI GACNNNNNGTC 1 cut(s) 363
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 350
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 312
AseI ATTAAT 1 cut(s) 285
AsiGI ACCGGT 1 cut(s) 236
AspS9I GGNCC 3 cut(s) 5, 251, 343
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 152, 198
AvaII GGWCC 3 cut(s) 5, 251, 343
BaeGI GKGCMC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 324
BccI CCATC 3 cut(s) 110, 176, 355
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 3 cut(s) 5, 251, 343
BmeRI GACNNNNNGTC 1 cut(s) 363
BmgT120I GGNCC 3 cut(s) 5, 251, 343
BmiI GGNNCC 5 cut(s) 6, 23, 80, 121, 345
BmrFI CCNGG 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 82, 294
BsaWI WCCGGW 2 cut(s) 96, 236
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 103, 243, 352
Bse118I RCCGGY 1 cut(s) 236
BseAI TCCGGA 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 82, 294
BseLI CCNNNNNNNGG 4 cut(s) 75, 103, 243, 352
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 78
BshTI ACCGGT 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 294
BsiSI CCGG 3 cut(s) 84, 97, 237
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 4 cut(s) 75, 103, 243, 352
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 83
Bsp13I TCCGGA 1 cut(s) 96
BspACI CCGC 3 cut(s) 25, 294, 296
BspANI GGCC 1 cut(s) 397
BspEI TCCGGA 1 cut(s) 96
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 5 cut(s) 6, 23, 80, 121, 345
BspMAI CTGCAG 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 82, 294
BssNI GRCGYC 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 359
BstDSI CCRYGG 1 cut(s) 294
BstFNI CGCG 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 350
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 83
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 395
BsuRI GGCC 1 cut(s) 397
BtgI CCRYGG 1 cut(s) 294
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 5, 251, 343
Cfr42I CCGCGG 1 cut(s) 297
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 331
CspAI ACCGGT 1 cut(s) 236
CviAII CATG 3 cut(s) 307, 340, 363
CviJI RGCY 3 cut(s) 50, 315, 397
CviKI_1 RGCY 3 cut(s) 50, 315, 397
CviQI GTAC 1 cut(s) 331
DriI GACNNNNNGTC 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 95
Eam1105I GACNNNNNGTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 397
Eco47I GGWCC 3 cut(s) 5, 251, 343
EcoO109I RGGNCCY 1 cut(s) 5
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 3 cut(s) 310, 343, 366
FaiI YATR 6 cut(s) 17, 151, 308, 341, 364, 383
FaqI GGGAC 1 cut(s) 329
FatI CATG 3 cut(s) 306, 339, 362
Fnu4HI GCNGC 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 313
HaeIII GGCC 1 cut(s) 397
HapII CCGG 3 cut(s) 84, 97, 237
HgaI GACGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 3 cut(s) 310, 343, 366
HinfI GANTC 5 cut(s) 146, 189, 265, 277, 301
HpaII CCGG 3 cut(s) 84, 97, 237
HphI GGTGA 2 cut(s) 152, 198
Hpy188I TCNGA 5 cut(s) 255, 270, 282, 291, 379
Hpy188III TCNNGA 2 cut(s) 97, 213
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 4 cut(s) 260, 328, 339, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 3 cut(s) 310, 343, 366
Kpn2I TCCGGA 1 cut(s) 96
KspI CCGCGG 1 cut(s) 297
LpnPI CCDG 5 cut(s) 97, 110, 226, 234, 250
Lsp1109I GCAGC 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 410
MboII GAAGA 3 cut(s) 57, 112, 400
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 12
MmeI TCCRAC 2 cut(s) 278, 314
MnlI CCTC 9 cut(s) 39, 47, 96, 152, 185, 229, 235, 267, 387
MroI TCCGGA 1 cut(s) 96
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 3 cut(s) 84, 97, 237
MspR9I CCNGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 403
NciI CCSGG 1 cut(s) 84
NlaIII CATG 3 cut(s) 310, 343, 366
NlaIV GGNNCC 5 cut(s) 6, 23, 80, 121, 345
PceI AGGCCT 1 cut(s) 397
PfeI GAWTC 5 cut(s) 146, 189, 265, 277, 301
PinAI ACCGGT 1 cut(s) 236
PkrI GCNGC 1 cut(s) 314
PpuMI RGGWCCY 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 5 cut(s) 6, 23, 80, 121, 345
PspPI GGNCC 3 cut(s) 5, 251, 343
PspPPI RGGWCCY 1 cut(s) 5
PstI CTGCAG 1 cut(s) 262
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacII CCGCGG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 313
Sau96I GGNCC 3 cut(s) 5, 251, 343
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 83
SetI ASST 6 cut(s) 177, 221, 227, 248, 253, 317
SfcI CTRYAG 1 cut(s) 258
Sfr303I CCGCGG 1 cut(s) 297
SgrBI CCGCGG 1 cut(s) 297
SinI GGWCC 3 cut(s) 5, 251, 343
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 3 cut(s) 25, 294, 296
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 144, 171
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 5 cut(s) 146, 189, 265, 277, 301
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 413
TseI GCWGC 1 cut(s) 312
TspRI CASTG 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 5, 251, 343
VspI ATTAAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.