Rh7DG371900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0023017
Physical Location & Seq
Forward (+)
50383123 .. 50383589
467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG371900.1

Sequence Viewer

Length: 273 bp
ATGGCATCGATACCCGAACATCGACCTCAGCTACAAGCCTACAACCGATTCTCGCTGCTTTTCTCGCCGTCCAGAACCTCTACCTCAACAACAATAGGTTCAAGGGTCAGGTCCAACTGCAGAGATTCCGATGAGGATTTAGATCAATCCAACTGCAGAGATTCCCCTGAGCAACTCGCTGTGTCTACAGTACAACTACATGGTCTCGCTAGTGGAGACGCCGTGCCAGTTGAAGTTCGGGATGCAGAAGACGAGGCTTACTGCACAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.92

Weight (kDa)

4.64

Isoelectric Point (pI)

64.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023017)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000197
rosa_samantha Rh6CG013500 Rh6DG014800 Rh7DG371900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 1 cut(s) 192
AgsI TTSAA 2 cut(s) 102, 233
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 2 cut(s) 209, 210
ApeKI GCWGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 111
AvaII GGWCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 42
BceAI ACGGC 2 cut(s) 52, 206
BcoDI GTCTC 2 cut(s) 209, 210
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 3 cut(s) 118, 154, 186
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmsI GCATC 2 cut(s) 14, 232
BpiI GAAGAC 1 cut(s) 255
Bpu10I CCTNAGC 2 cut(s) 27, 168
Bsa29I ATCGAT 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bse1I ACTGG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 8
BseGI GGATG 1 cut(s) 247
BseJI GATNNNNATC 1 cut(s) 141
BseMII CTCAG 2 cut(s) 41, 159
BseNI ACTGG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 247
BshVI ATCGAT 1 cut(s) 8
BsmAI GTCTC 2 cut(s) 209, 210
BsmBI CGTCTC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 142
BspCNI CTCAG 2 cut(s) 40, 160
BspDI ATCGAT 1 cut(s) 8
BspMAI CTGCAG 2 cut(s) 122, 158
BspTNI GGTCTC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 227
BssMI GATC 1 cut(s) 142
BssNI GRCGYC 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 27, 168
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 2 cut(s) 209, 210
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstSFI CTRYAG 3 cut(s) 118, 154, 186
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 255
Bsu15I ATCGAT 1 cut(s) 8
BsuTUI ATCGAT 1 cut(s) 8
BtsCI GGATG 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 8
CseI GACGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 31, 38, 257
CviKI_1 RGCY 3 cut(s) 31, 38, 257
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 2 cut(s) 27, 168
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 210
FaeI CATG 1 cut(s) 203
FaiI YATR 1 cut(s) 201
FatI CATG 1 cut(s) 199
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 210
GluI GCNGC 1 cut(s) 56
HgaI GACGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 203
HinfI GANTC 3 cut(s) 48, 125, 161
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 72, 239
Hpy8I GTNNAC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 4 cut(s) 120, 156, 245, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 27, 168
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 4 cut(s) 85, 94, 180, 240
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 2 cut(s) 14, 232
MaeI CTAG 1 cut(s) 210
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 260
MmeI TCCRAC 2 cut(s) 138, 174
MnlI CCTC 5 cut(s) 36, 88, 94, 127, 247
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 203
PfeI GAWTC 3 cut(s) 48, 125, 161
PkrI GCNGC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 111
PstI CTGCAG 2 cut(s) 122, 158
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 111
SetI ASST 6 cut(s) 28, 33, 80, 86, 100, 113
SfaNI GCATC 2 cut(s) 14, 232
SfcI CTRYAG 3 cut(s) 118, 154, 186
SinI GGWCC 1 cut(s) 111
SspMI CTAG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 8, 22
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 3 cut(s) 48, 125, 161
TseI GCWGC 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.