Rh6DG014800

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0023017
Physical Location & Seq
Forward (+)
1433866 .. 1436289
2424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG014800.1

Sequence Viewer

Length: 420 bp
ATGGGTCCTTCAATTATGGGGTTCCGCCCTTTACTCCTCAAATGGAGGGCTGTGGGGATATTTTCTTCCCCAATAGGGTGCCCCGGCGTGATGTTCCGGAAGAGGGTCAAACCCGATGGAACCGATACCCGTAGTCAAACCCTCGAATCATATTTCAATCACCCGACCATCGACCTCAACTACAACCGATTCTCGCCGATGTTCTCACCGTCCAGAACCTCTACCTCAACAACAACCGGTTCAAGGTCAGGTCCGACTGCAGAGATTCAGACGAGGATTCAGATTAATCCGACCGCGGAGATTCCCATGAGCAGCTCGTTGTGTTTGCAGTACAACTGCATGGTCCCATCGGTGGAGACGCCATGTCTGTTGAAGTCCGATATGCAGAAGACGAGGCCTACTACGCAGTGTAACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006833 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009798 GO:0009888 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010087 GO:0010103 GO:0010148 GO:0010229 GO:0010286 GO:0010374 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0022603 GO:0023052 GO:0030155 GO:0032501 GO:0032502 GO:0033218 GO:0033554 GO:0033612 GO:0034605 GO:0036211 GO:0038023 GO:0040008 GO:0042044 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048281 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065001 GO:0065007 GO:0070370 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:1905421 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

139

Amino Acids

15.46

Weight (kDa)

9.36

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023017)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000197
rosa_samantha Rh6CG013500 Rh6DG014800 Rh7DG371900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 78
AccII CGCG 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 3 cut(s) 25, 294, 296
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 4 cut(s) 75, 103, 243, 352
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 4 cut(s) 12, 157, 243, 373
AhdI GACNNNNNGTC 1 cut(s) 363
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 350
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 312
AseI ATTAAT 1 cut(s) 285
AsiGI ACCGGT 1 cut(s) 236
AspS9I GGNCC 3 cut(s) 5, 251, 343
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 152, 198
AvaII GGWCC 3 cut(s) 5, 251, 343
BaeGI GKGCMC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 324
BccI CCATC 3 cut(s) 110, 176, 355
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 3 cut(s) 5, 251, 343
BmeRI GACNNNNNGTC 1 cut(s) 363
BmgT120I GGNCC 3 cut(s) 5, 251, 343
BmiI GGNNCC 5 cut(s) 6, 23, 80, 121, 345
BmrFI CCNGG 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 82, 294
BsaWI WCCGGW 2 cut(s) 96, 236
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 103, 243, 352
Bse118I RCCGGY 1 cut(s) 236
BseAI TCCGGA 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 82, 294
BseLI CCNNNNNNNGG 4 cut(s) 75, 103, 243, 352
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 78
BshTI ACCGGT 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 294
BsiSI CCGG 3 cut(s) 84, 97, 237
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 4 cut(s) 75, 103, 243, 352
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 83
Bsp13I TCCGGA 1 cut(s) 96
BspACI CCGC 3 cut(s) 25, 294, 296
BspANI GGCC 1 cut(s) 397
BspEI TCCGGA 1 cut(s) 96
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 5 cut(s) 6, 23, 80, 121, 345
BspMAI CTGCAG 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 82, 294
BssNI GRCGYC 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 359
BstDSI CCRYGG 1 cut(s) 294
BstFNI CGCG 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 350
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 83
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 395
BsuRI GGCC 1 cut(s) 397
BtgI CCRYGG 1 cut(s) 294
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 5, 251, 343
Cfr42I CCGCGG 1 cut(s) 297
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 331
CspAI ACCGGT 1 cut(s) 236
CviAII CATG 3 cut(s) 307, 340, 363
CviJI RGCY 3 cut(s) 50, 315, 397
CviKI_1 RGCY 3 cut(s) 50, 315, 397
CviQI GTAC 1 cut(s) 331
DriI GACNNNNNGTC 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 95
Eam1105I GACNNNNNGTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 397
Eco47I GGWCC 3 cut(s) 5, 251, 343
EcoO109I RGGNCCY 1 cut(s) 5
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 3 cut(s) 310, 343, 366
FaiI YATR 6 cut(s) 17, 151, 308, 341, 364, 383
FaqI GGGAC 1 cut(s) 329
FatI CATG 3 cut(s) 306, 339, 362
Fnu4HI GCNGC 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 313
HaeIII GGCC 1 cut(s) 397
HapII CCGG 3 cut(s) 84, 97, 237
HgaI GACGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 3 cut(s) 310, 343, 366
HinfI GANTC 5 cut(s) 146, 189, 265, 277, 301
HpaII CCGG 3 cut(s) 84, 97, 237
HphI GGTGA 2 cut(s) 152, 198
Hpy188I TCNGA 5 cut(s) 255, 270, 282, 291, 379
Hpy188III TCNNGA 2 cut(s) 97, 213
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 4 cut(s) 260, 328, 339, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 3 cut(s) 310, 343, 366
Kpn2I TCCGGA 1 cut(s) 96
KspI CCGCGG 1 cut(s) 297
LpnPI CCDG 5 cut(s) 97, 110, 226, 234, 250
Lsp1109I GCAGC 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 410
MboII GAAGA 3 cut(s) 57, 112, 400
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 12
MmeI TCCRAC 2 cut(s) 278, 314
MnlI CCTC 9 cut(s) 39, 47, 96, 152, 185, 229, 235, 267, 387
MroI TCCGGA 1 cut(s) 96
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 3 cut(s) 84, 97, 237
MspR9I CCNGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 403
NciI CCSGG 1 cut(s) 84
NlaIII CATG 3 cut(s) 310, 343, 366
NlaIV GGNNCC 5 cut(s) 6, 23, 80, 121, 345
PceI AGGCCT 1 cut(s) 397
PfeI GAWTC 5 cut(s) 146, 189, 265, 277, 301
PinAI ACCGGT 1 cut(s) 236
PkrI GCNGC 1 cut(s) 314
PpuMI RGGWCCY 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 5 cut(s) 6, 23, 80, 121, 345
PspPI GGNCC 3 cut(s) 5, 251, 343
PspPPI RGGWCCY 1 cut(s) 5
PstI CTGCAG 1 cut(s) 262
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacII CCGCGG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 313
Sau96I GGNCC 3 cut(s) 5, 251, 343
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 83
SetI ASST 6 cut(s) 177, 221, 227, 248, 253, 317
SfcI CTRYAG 1 cut(s) 258
Sfr303I CCGCGG 1 cut(s) 297
SgrBI CCGCGG 1 cut(s) 297
SinI GGWCC 3 cut(s) 5, 251, 343
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 3 cut(s) 25, 294, 296
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 144, 171
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 5 cut(s) 146, 189, 265, 277, 301
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 413
TseI GCWGC 1 cut(s) 312
TspRI CASTG 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 5, 251, 343
VspI ATTAAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.