RLG00000000426

cytochrome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018296
Physical Location & Seq
Reverse (-)
934662 .. 935482
821 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000426

Sequence Viewer

Length: 339 bp
ATGCCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACCGATCCATGCCATTCTTCGTAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCACCAGTTTTTATATGTGGAAGAGTATTCTGCATGAATATGCTTCTGCACTGGGAATATATCATAGCCAGAGATCATAAAGGATGGGATGGGAATGGAGGCATTCCAGCGGGATGGGACGTAGTGAAGTGGGAAGTGAAGTGTGTAGATAATACGTGTTCTTTAGAAGCGCTTATGCGGTGGCTAGTGAGCATCCTTGCCAACCCAAAAAGGGAACAGCGGCTTCTTGAGTACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Cytochrom_B_C Cytochrome_B

Protein Analysis

113

Amino Acids

12.77

Weight (kDa)

6.89

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B_C PF00032 1 - 37 3.7e-13 Cytochrome b(C-terminal)/b6/petD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07727 ATMG00220
rosa_chinensis RchiOBHm_MTg0499071
rosa_laevigata RLG00000000274 RLG00000000408 RLG00000000426 RLG00000000483
rosa_roxburghii Rroxscaffold_2G00119480
rosa_samantha Rh1BG203000 Rh1DG230000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 67
AciI CCGC 6 cut(s) 11, 80, 93, 209, 277, 319
AclWI GGATC 1 cut(s) 40
AfaI GTAC 1 cut(s) 332
AfeI AGCGCT 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 254
AlwI GGATC 1 cut(s) 40
Aor51HI AGCGCT 1 cut(s) 270
AspLEI GCGC 1 cut(s) 271
BccI CCATC 3 cut(s) 177, 182, 207
BfaI CTAG 1 cut(s) 284
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 2 cut(s) 93, 320
BlsI GCNGC 2 cut(s) 94, 321
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 160
BsaAI YACGTR 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 104, 155
BseGI GGATG 4 cut(s) 188, 193, 218, 291
BseLI CCNNNNNNNGG 1 cut(s) 310
BseNI ACTGG 2 cut(s) 104, 155
BsgI GTGCAG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 45, 172
BspACI CCGC 6 cut(s) 11, 80, 93, 209, 277, 319
BspPI GGATC 1 cut(s) 40
BsrI ACTGG 2 cut(s) 104, 155
BssMI GATC 2 cut(s) 45, 172
BssNAI GTATAC 1 cut(s) 68
Bst1107I GTATAC 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 115
BstBAI YACGTR 1 cut(s) 255
BstF5I GGATG 4 cut(s) 188, 193, 218, 291
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 2 cut(s) 48, 175
BstMBI GATC 2 cut(s) 45, 172
BstMWI GCNNNNNNNGC 2 cut(s) 10, 98
BstXI CCANNNNNNTGG 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 68
BtsCI GGATG 4 cut(s) 188, 193, 218, 291
BtsIMutI CAGTG 1 cut(s) 148
CfoI GCGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 331
CviAII CATG 2 cut(s) 50, 133
CviJI RGCY 4 cut(s) 92, 167, 283, 322
CviKI_1 RGCY 4 cut(s) 92, 167, 283, 322
CviQI GTAC 1 cut(s) 331
DpnI GATC 2 cut(s) 47, 174
DpnII GATC 2 cut(s) 45, 172
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco47III AGCGCT 1 cut(s) 270
FaeI CATG 2 cut(s) 53, 136
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 49, 132
FauI CCCGC 3 cut(s) 18, 73, 202
FblI GTMKAC 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 93, 320
FokI GGATG 4 cut(s) 195, 200, 225, 278
Fsp4HI GCNGC 2 cut(s) 93, 320
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 270
GluI GCNGC 2 cut(s) 93, 320
HaeII RGCGCY 1 cut(s) 272
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 271
Hin1II CATG 2 cut(s) 53, 136
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HpaII CCGG 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 68
HpyCH4IV ACGT 2 cut(s) 219, 254
HpyCH4V TGCA 2 cut(s) 132, 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 98
HpySE526I ACGT 2 cut(s) 219, 254
Hsp92II CATG 2 cut(s) 53, 136
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 2 cut(s) 45, 172
LpnPI CCDG 6 cut(s) 39, 84, 117, 136, 181, 219
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 219, 254
MalI GATC 2 cut(s) 47, 174
MboI GATC 2 cut(s) 45, 172
MboII GAAGA 2 cut(s) 50, 132
MnlI CCTC 3 cut(s) 24, 77, 191
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 2 cut(s) 209, 319
MspI CCGG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 10, 98
NdeII GATC 2 cut(s) 45, 172
NlaIII CATG 2 cut(s) 53, 136
PctI GAATGC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 94, 321
Ppu21I YACGTR 1 cut(s) 255
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 137
SatI GCNGC 2 cut(s) 93, 320
Sau3AI GATC 2 cut(s) 45, 172
SetI ASST 5 cut(s) 73, 88, 222, 257, 336
SfaNI GCATC 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SsiI CCGC 6 cut(s) 11, 80, 93, 209, 277, 319
SspMI CTAG 1 cut(s) 284
TaiI ACGT 2 cut(s) 222, 257
TauI GCSGC 2 cut(s) 95, 322
TscAI CASTG 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 149
TspRI CASTG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 67
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.