Rroxscaffold_2G00119480

Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018296
Physical Location & Seq
Forward (+)
51305693 .. 51306703
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119480.1

Sequence Viewer

Length: 1011 bp
ATGCATCACACACCTCATGTGGATCTAGCTTTCAACAGCGTAGAACACATTATGAGAGATGTTGAAGGGGGTTGGTTGCTCCGTTATATGCATGCTAATGGGGCAAGTATGTTTCTCATTGTGGTTCACCTTCATATTTTTCGCGGTCTATATCATGCGAGTTATAGCAGTCCTAGGGAATTTGTTTGGTGTCTCGGAGTTGTAATCTTCCTATTAATGATTGTGACAGCTTTTACAGGATACGTACTACCTTGGGGTCAGATGAGCTTTTGGGGAGCTACAGTAATTACAAGCTTAGCTAGCGCCATACCTGTAGTAGGGGATACCATAGTGACTTGGCTTTGGGGCGGTTTCTCCGTGGACAATGCCACCTTAAATCGTTTTTTTAGTCTTCATCATTTACTCCCCTTTATTTTAGTAGGCGCCAGTCTTCTTCATCTGGCCGCATTGCATCAATATGGATCAAATAATCCATTGGGTGTACATTCAGAGATGGATAAAATTTCTTTTTACCCTTATTTTTATGTAAAAGATCTAGTAGGTTGGGTAGCTTTTTCTATCTTTTCTTCCATTTGGATTTTTTATGCTCCTAATGTTTTGGGGCATCCCGACAATTATATACCTGCTAATCCGATGCCCACCCCGGCTCATATTGTGCCGGAATGGTATTTCCTACCGATCCATGCCATTCTTCGTAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCACCAGTTTTTATATGTCTGTTGGCTTTACCTTTTTTTAAAAGTATGTATGTGCGTAGTTCAAGTTTTCGCCCTATTCACCAAGCAATATTTTGGTTGCTTTTGGCGGATTGCATACTACTAGGTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTTCTCCTTTAGTTTTCTTCTTATTCTTTGCCATAACGCCCATTTCGGGAAAAGTTGGAAGAGGAATTCCTAATTCTTACACGGATGAGACTGATCACACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Cytochrom_B_C Cytochrome_B

Protein Analysis

336

Amino Acids

37.59

Weight (kDa)

6.5

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_B PF00033 1 - 154 1.4e-66 Cytochrome b/b6/petB
Cytochrom_B_N_2 PF13631 37 - 203 8.1e-44 Cytochrome b(N-terminal)/b6/petB
Cytochrom_B_C PF00032 208 - 309 9.7e-35 Cytochrome b(C-terminal)/b6/petD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07727 ATMG00220
rosa_chinensis RchiOBHm_MTg0499071
rosa_laevigata RLG00000000274 RLG00000000408 RLG00000000426 RLG00000000483
rosa_roxburghii Rroxscaffold_2G00119480
rosa_samantha Rh1BG203000 Rh1DG230000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 631
AccB1I GGYRCC 2 cut(s) 422, 883
AccI GTMKAC 1 cut(s) 700
AccII CGCG 1 cut(s) 144
AciI CCGC 6 cut(s) 144, 348, 444, 713, 726, 839
AclWI GGATC 4 cut(s) 30, 469, 673, 869
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 4 cut(s) 179, 501, 906, 972
AcyI GRCGYC 1 cut(s) 423
AfaI GTAC 2 cut(s) 246, 483
AfiI CCNNNNNNNGG 2 cut(s) 317, 953
AgsI TTSAA 3 cut(s) 34, 65, 795
AluBI AGCT 7 cut(s) 29, 230, 267, 278, 294, 299, 551
AluI AGCT 7 cut(s) 29, 230, 267, 278, 294, 299, 551
Alw26I GTCTC 2 cut(s) 197, 989
AlwI GGATC 4 cut(s) 30, 469, 673, 869
AoxI GGCC 1 cut(s) 441
ApoI RAATTY 4 cut(s) 179, 501, 906, 972
AseI ATTAAT 1 cut(s) 215
AspA2I CCTAGG 1 cut(s) 173
AspLEI GCGC 2 cut(s) 305, 425
AsuC2I CCSGG 1 cut(s) 644
AsuHPI GGTGA 2 cut(s) 119, 803
AsuNHI GCTAGC 1 cut(s) 299
AvrII CCTAGG 1 cut(s) 173
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BanI GGYRCC 2 cut(s) 422, 883
BbsI GAAGAC 2 cut(s) 383, 422
BccI CCATC 1 cut(s) 487
BciVI GTATCC 2 cut(s) 233, 316
BclI TGATCA 1 cut(s) 1000
BcnI CCSGG 1 cut(s) 644
BcoDI GTCTC 2 cut(s) 197, 989
BfaI CTAG 5 cut(s) 26, 174, 300, 536, 854
BfmI CTRYAG 2 cut(s) 279, 312
BfoI RGCGCY 2 cut(s) 306, 426
BfuAI ACCTGC 1 cut(s) 631
BfuI GTATCC 2 cut(s) 233, 316
BglII AGATCT 1 cut(s) 532
BisI GCNGC 2 cut(s) 444, 726
BlnI CCTAGG 1 cut(s) 173
BlpI GCTNAGC 1 cut(s) 295
BlsI GCNGC 2 cut(s) 445, 727
Bme1390I CCNGG 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 424, 885
BmrFI CCNGG 1 cut(s) 644
BmsI GCATC 4 cut(s) 13, 460, 613, 624
BmtI GCTAGC 1 cut(s) 303
BpiI GAAGAC 2 cut(s) 383, 422
Bpu1102I GCTNAGC 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 644
BsaAI YACGTR 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 423
BsaJI CCNNGG 4 cut(s) 173, 251, 357, 642
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 953
Bse1I ACTGG 2 cut(s) 426, 737
Bse3DI GCAATG 1 cut(s) 446
BseDI CCNNGG 4 cut(s) 173, 251, 357, 642
BseGI GGATG 3 cut(s) 604, 872, 997
BseLI CCNNNNNNNGG 2 cut(s) 317, 953
BseMI GCAATG 1 cut(s) 446
BseNI ACTGG 2 cut(s) 426, 737
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 443
BshNI GGYRCC 2 cut(s) 422, 883
BsiSI CCGG 2 cut(s) 644, 659
BslI CCNNNNNNNGG 2 cut(s) 317, 953
BsmAI GTCTC 2 cut(s) 197, 989
BsnI GGCC 1 cut(s) 443
Bsp1407I TGTACA 1 cut(s) 481
Bsp143I GATC 6 cut(s) 22, 461, 532, 678, 861, 1000
Bsp1720I GCTNAGC 1 cut(s) 295
BspACI CCGC 6 cut(s) 144, 348, 444, 713, 726, 839
BspANI GGCC 1 cut(s) 443
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 424, 885
BspMI ACCTGC 1 cut(s) 631
BspOI GCTAGC 1 cut(s) 303
BspPI GGATC 4 cut(s) 30, 469, 673, 869
BspT107I GGYRCC 2 cut(s) 422, 883
BsrDI GCAATG 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 481
BsrI ACTGG 2 cut(s) 426, 737
BssECI CCNNGG 4 cut(s) 173, 251, 357, 642
BssMI GATC 6 cut(s) 22, 461, 532, 678, 861, 1000
BssNAI GTATAC 1 cut(s) 701
BssNI GRCGYC 1 cut(s) 423
BssT1I CCWWGG 2 cut(s) 173, 251
Bst1107I GTATAC 1 cut(s) 701
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 961
BstACI GRCGYC 1 cut(s) 423
BstAUI TGTACA 1 cut(s) 481
BstBAI YACGTR 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 93, 301
BstDEI CTNAG 1 cut(s) 295
BstDSI CCRYGG 1 cut(s) 357
BstENI CCTNNNNNAGG 1 cut(s) 315
BstF5I GGATG 3 cut(s) 604, 872, 997
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 2 cut(s) 306, 426
BstHHI GCGC 2 cut(s) 305, 425
BstKTI GATC 6 cut(s) 25, 464, 535, 681, 864, 1003
BstMAI GTCTC 2 cut(s) 197, 989
BstMBI GATC 6 cut(s) 22, 461, 532, 678, 861, 1000
BstMWI GCNNNNNNNGC 3 cut(s) 101, 300, 731
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 642
BstSFI CTRYAG 2 cut(s) 279, 312
BstSNI TACGTA 1 cut(s) 244
BstUI CGCG 1 cut(s) 144
BstV2I GAAGAC 2 cut(s) 383, 422
BstX2I RGATCY 2 cut(s) 22, 532
BstYI RGATCY 2 cut(s) 22, 532
BstZ17I GTATAC 1 cut(s) 701
BsuI GTATCC 2 cut(s) 233, 316
BsuRI GGCC 1 cut(s) 443
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 604, 872, 997
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 2 cut(s) 93, 301
CfoI GCGC 2 cut(s) 305, 425
Csp6I GTAC 2 cut(s) 245, 482
CviAII CATG 4 cut(s) 17, 92, 155, 683
CviQI GTAC 2 cut(s) 245, 482
DdeI CTNAG 1 cut(s) 295
DinI GGCGCC 1 cut(s) 424
DpnI GATC 6 cut(s) 24, 463, 534, 680, 863, 1002
DpnII GATC 6 cut(s) 22, 461, 532, 678, 861, 1000
DraI TTTAAA 1 cut(s) 772
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 961
EarI CTCTTC 1 cut(s) 961
EciI GGCGGA 1 cut(s) 854
Eco105I TACGTA 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 173, 251
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoRI GAATTC 1 cut(s) 972
EcoT14I CCWWGG 2 cut(s) 173, 251
EcoT22I ATGCAT 2 cut(s) 6, 93
EgeI GGCGCC 1 cut(s) 424
EheI GGCGCC 1 cut(s) 424
ErhI CCWWGG 2 cut(s) 173, 251
FaeI CATG 4 cut(s) 20, 95, 158, 686
FatI CATG 4 cut(s) 16, 91, 154, 682
FauI CCCGC 1 cut(s) 706
FbaI TGATCA 1 cut(s) 1000
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 2 cut(s) 444, 726
FokI GGATG 3 cut(s) 591, 879, 1004
Fsp4HI GCNGC 2 cut(s) 444, 726
FspBI CTAG 5 cut(s) 26, 174, 300, 536, 854
GlaI GCGC 2 cut(s) 304, 424
GluI GCNGC 2 cut(s) 444, 726
HaeII RGCGCY 2 cut(s) 306, 426
HaeIII GGCC 1 cut(s) 443
HapII CCGG 2 cut(s) 644, 659
HhaI GCGC 2 cut(s) 305, 425
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 4 cut(s) 20, 95, 158, 686
Hin6I GCGC 2 cut(s) 303, 423
HinP1I GCGC 2 cut(s) 303, 423
HincII GTYRAC 1 cut(s) 872
HindII GTYRAC 1 cut(s) 872
HindIII AAGCTT 1 cut(s) 292
HpaII CCGG 2 cut(s) 644, 659
HphI GGTGA 2 cut(s) 119, 803
Hpy166II GTNNAC 5 cut(s) 127, 361, 482, 701, 872
Hpy188I TCNGA 5 cut(s) 197, 261, 490, 633, 866
Hpy188III TCNNGA 2 cut(s) 608, 954
Hpy8I GTNNAC 5 cut(s) 127, 361, 482, 701, 872
HpyAV CCTTC 2 cut(s) 59, 140
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 4, 91, 451, 846
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 300, 731
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 4 cut(s) 20, 95, 158, 686
HspAI GCGC 2 cut(s) 303, 423
KasI GGCGCC 1 cut(s) 422
Ksp22I TGATCA 1 cut(s) 1000
Kzo9I GATC 6 cut(s) 22, 461, 532, 678, 861, 1000
LmnI GCTCC 3 cut(s) 84, 275, 592
LweI GCATC 4 cut(s) 13, 460, 613, 624
MaeI CTAG 5 cut(s) 26, 174, 300, 536, 854
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 3 cut(s) 223, 331, 892
MalI GATC 6 cut(s) 24, 463, 534, 680, 863, 1002
MboI GATC 6 cut(s) 22, 461, 532, 678, 861, 1000
MboII GAAGA 8 cut(s) 199, 383, 422, 425, 558, 683, 916, 978
MflI RGATCY 2 cut(s) 22, 532
MluCI AATT 7 cut(s) 179, 285, 501, 613, 906, 972, 979
Mly113I GGCGCC 1 cut(s) 423
MmeI TCCRAC 2 cut(s) 839, 943
MnlI CCTC 4 cut(s) 24, 710, 874, 962
Mph1103I ATGCAT 2 cut(s) 6, 93
MseI TTAA 3 cut(s) 215, 374, 771
MslI CAYNNNNRTG 2 cut(s) 96, 456
MspI CCGG 2 cut(s) 644, 659
MspR9I CCNGG 1 cut(s) 644
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 101, 300, 731
NarI GGCGCC 1 cut(s) 423
NciI CCSGG 1 cut(s) 644
NdeII GATC 6 cut(s) 22, 461, 532, 678, 861, 1000
NheI GCTAGC 1 cut(s) 299
NlaIII CATG 4 cut(s) 20, 95, 158, 686
NlaIV GGNNCC 2 cut(s) 424, 885
NmuCI GTSAC 2 cut(s) 223, 331
NsiI ATGCAT 2 cut(s) 6, 93
NspI RCATGY 1 cut(s) 95
PaeI GCATGC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 445, 727
PluTI GGCGCC 1 cut(s) 426
Ppu21I YACGTR 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 424, 885
PsuI RGATCY 2 cut(s) 22, 532
RsaI GTAC 2 cut(s) 246, 483
RsaNI GTAC 2 cut(s) 245, 482
RseI CAYNNNNRTG 2 cut(s) 96, 456
SaqAI TTAA 3 cut(s) 215, 374, 771
SatI GCNGC 2 cut(s) 444, 726
Sau3AI GATC 6 cut(s) 22, 461, 532, 678, 861, 1000
ScrFI CCNGG 1 cut(s) 644
SfaNI GCATC 4 cut(s) 13, 460, 613, 624
SfcI CTRYAG 2 cut(s) 279, 312
SfoI GGCGCC 1 cut(s) 424
SmiMI CAYNNNNRTG 2 cut(s) 96, 456
SnaBI TACGTA 1 cut(s) 244
SphI GCATGC 1 cut(s) 95
Sse9I AATT 7 cut(s) 179, 285, 501, 613, 906, 972, 979
SsiI CCGC 6 cut(s) 144, 348, 444, 713, 726, 839
SspDI GGCGCC 1 cut(s) 422
SspI AATATT 1 cut(s) 822
SspMI CTAG 5 cut(s) 26, 174, 300, 536, 854
StyD4I CCNGG 1 cut(s) 642
StyI CCWWGG 2 cut(s) 173, 251
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 246
TasI AATT 7 cut(s) 179, 285, 501, 613, 906, 972, 979
TatI WGTACW 1 cut(s) 481
TauI GCSGC 2 cut(s) 446, 728
Tru1I TTAA 3 cut(s) 215, 374, 771
Tru9I TTAA 3 cut(s) 215, 374, 771
TseFI GTSAC 2 cut(s) 223, 331
Tsp45I GTSAC 2 cut(s) 223, 331
TspDTI ATGAA 3 cut(s) 122, 383, 425
TspGWI ACGGA 3 cut(s) 71, 346, 1004
VspI ATTAAT 1 cut(s) 215
XagI CCTNNNNNAGG 1 cut(s) 315
XapI RAATTY 4 cut(s) 179, 501, 906, 972
XceI RCATGY 1 cut(s) 95
XmaJI CCTAGG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 700
XspI CTAG 5 cut(s) 26, 174, 300, 536, 854
Zsp2I ATGCAT 2 cut(s) 6, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.