RLG00000000881

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0022843
Physical Location & Seq
Reverse (-)
7323482 .. 7323921
440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000881

Sequence Viewer

Length: 411 bp
ATGAGGCTTGAGGGATCCAAAGTTACAGCCACTTCTCCGTATTCGTTGGCTGCGGCCTCTTTGCTCCGACTGCTTTTGCGGTTGGTCGTTGGTCCTCAGGTTGGGATGCCCGAAGGAGGTTTGATCTATGGGGCGGCATGGTCGTCGGCGTCTAGAGATATTTGGATGCAGATGATGATGATCCGGGCAGACTGGGTCGAGTGTTTTGGTCCTCTACTAGGGACGACGACATTGATGCTGACTGCTGGGATACGTCTTGGCTTGCGTCGACTGGCTTTGGTGACTGGAGTGGCGGCTCTAAGCCTGGCGATAGGTACGGCGATGGACGCGGTGGTGACCAAGATGGCGGTGGCAGCGACCTCCCATGGATTGCGCCAGGGTTTCACCAGGCTGGGCCTCTTGGGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.35

Weight (kDa)

10.47

Isoelectric Point (pI)

30.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022843)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000881
rosa_multiflora Rmu_sc0004165.1_g000040
rosa_samantha Rh2AG373700 Rh5CG470000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 268
AccII CGCG 1 cut(s) 329
AciI CCGC 6 cut(s) 53, 79, 134, 293, 329, 347
AclWI GGATC 3 cut(s) 9, 22, 175
AcyI GRCGYC 1 cut(s) 149
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 3 cut(s) 101, 116, 218
AjnI CCWGG 3 cut(s) 303, 375, 386
AlwI GGATC 3 cut(s) 9, 22, 175
AoxI GGCC 2 cut(s) 54, 394
ApeKI GCWGC 2 cut(s) 50, 353
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 3 cut(s) 92, 209, 394
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 292, 346, 376
AvaII GGWCC 2 cut(s) 92, 209
AxyI CCTNAGG 1 cut(s) 96
BamHI GGATCC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 37, 365
BccI CCATC 2 cut(s) 316, 337
BceAI ACGGC 1 cut(s) 333
BcgI CGANNNNNNTGC 4 cut(s) 126, 160, 217, 251
BciT130I CCWGG 3 cut(s) 305, 377, 388
BciVI GTATCC 1 cut(s) 243
BcnI CCSGG 1 cut(s) 185
BfaI CTAG 2 cut(s) 153, 218
BfuI GTATCC 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 402
BisI GCNGC 5 cut(s) 51, 54, 135, 294, 354
BlsI GCNGC 5 cut(s) 52, 55, 136, 295, 355
Bme1390I CCNGG 4 cut(s) 185, 305, 377, 388
Bme18I GGWCC 2 cut(s) 92, 209
BmgT120I GGNCC 3 cut(s) 92, 209, 394
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 4 cut(s) 185, 305, 377, 388
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 3 cut(s) 96, 156, 225
BmuI ACTGGG 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 364, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 116, 218
Bse1I ACTGG 3 cut(s) 197, 276, 289
Bse21I CCTNAGG 1 cut(s) 96
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 3 cut(s) 305, 377, 388
BseDI CCNNGG 2 cut(s) 364, 376
BseGI GGATG 2 cut(s) 111, 171
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 3 cut(s) 101, 116, 218
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 3 cut(s) 197, 276, 289
BseXI GCAGC 2 cut(s) 37, 365
BseYI CCCAGC 2 cut(s) 245, 391
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 56, 396
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 3 cut(s) 101, 116, 218
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 2 cut(s) 56, 396
Bsp143I GATC 3 cut(s) 14, 123, 180
Bsp19I CCATGG 1 cut(s) 364
BspACI CCGC 6 cut(s) 53, 79, 134, 293, 329, 347
BspANI GGCC 2 cut(s) 56, 396
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 3 cut(s) 9, 22, 175
BsrI ACTGG 3 cut(s) 197, 276, 289
BssECI CCNNGG 2 cut(s) 364, 376
BssMI GATC 3 cut(s) 14, 123, 180
BssNI GRCGYC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 3 cut(s) 305, 377, 388
BstACI GRCGYC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 96, 299
BstDSI CCRYGG 1 cut(s) 364
BstEII GGTNACC 1 cut(s) 334
BstENI CCTNNNNNAGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 111, 171
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 3 cut(s) 17, 126, 183
BstMBI GATC 3 cut(s) 14, 123, 180
BstMWI GCNNNNNNNGC 4 cut(s) 70, 326, 353, 402
BstNI CCWGG 3 cut(s) 305, 377, 388
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 4 cut(s) 183, 303, 375, 386
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 37, 365
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
Bsu36I CCTNAGG 1 cut(s) 96
BsuI GTATCC 1 cut(s) 243
BsuRI GGCC 2 cut(s) 56, 396
BtgI CCRYGG 1 cut(s) 364
BtgZI GCGATG 1 cut(s) 335
BtsCI GGATG 2 cut(s) 111, 171
Cac8I GCNNGC 1 cut(s) 263
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 3 cut(s) 92, 209, 394
CseI GACGC 3 cut(s) 138, 254, 335
Csp6I GTAC 1 cut(s) 315
CviAII CATG 2 cut(s) 138, 365
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 2 cut(s) 96, 299
DpnI GATC 3 cut(s) 16, 125, 182
DpnII GATC 3 cut(s) 14, 123, 180
Eco130I CCWWGG 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 92, 209
Eco81I CCTNAGG 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 334
EcoNI CCTNNNNNAGG 1 cut(s) 216
EcoO65I GGTNACC 1 cut(s) 334
EcoRII CCWGG 3 cut(s) 303, 375, 386
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 2 cut(s) 141, 368
FaiI YATR 3 cut(s) 129, 139, 366
FaqI GGGAC 1 cut(s) 235
FatI CATG 2 cut(s) 137, 364
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 5 cut(s) 51, 54, 135, 294, 354
FokI GGATG 2 cut(s) 118, 178
Fsp4HI GCNGC 5 cut(s) 51, 54, 135, 294, 354
FspBI CTAG 2 cut(s) 153, 218
GlaI GCGC 1 cut(s) 374
GluI GCNGC 5 cut(s) 51, 54, 135, 294, 354
GsaI CCCAGC 2 cut(s) 249, 395
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 2 cut(s) 56, 396
HapII CCGG 1 cut(s) 184
HgaI GACGC 3 cut(s) 138, 254, 335
HhaI GCGC 1 cut(s) 375
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 2 cut(s) 141, 368
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HpaII CCGG 1 cut(s) 184
HphI GGTGA 3 cut(s) 292, 346, 376
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 153
Hpy8I GTNNAC 1 cut(s) 269
Hpy99I CGWCG 3 cut(s) 148, 229, 270
HpyAV CCTTC 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 326, 353, 402
HpyF3I CTNAG 2 cut(s) 96, 299
HpySE526I ACGT 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 2 cut(s) 141, 368
HspAI GCGC 1 cut(s) 373
Kzo9I GATC 3 cut(s) 14, 123, 180
LmnI GCTCC 1 cut(s) 69
Lsp1109I GCAGC 2 cut(s) 37, 365
LweI GCATC 3 cut(s) 96, 156, 225
MaeI CTAG 2 cut(s) 153, 218
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 3 cut(s) 22, 280, 334
MalI GATC 3 cut(s) 16, 125, 182
MboI GATC 3 cut(s) 14, 123, 180
MflI RGATCY 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 7 cut(s) 4, 67, 105, 110, 222, 370, 407
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 4 cut(s) 185, 305, 377, 388
MvaI CCWGG 3 cut(s) 305, 377, 388
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 4 cut(s) 70, 326, 353, 402
NciI CCSGG 1 cut(s) 185
NcoI CCATGG 1 cut(s) 364
NdeII GATC 3 cut(s) 14, 123, 180
NlaIII CATG 2 cut(s) 141, 368
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 2 cut(s) 280, 334
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 5 cut(s) 52, 55, 136, 295, 355
Psp6I CCWGG 3 cut(s) 303, 375, 386
PspEI GGTNACC 1 cut(s) 334
PspFI CCCAGC 2 cut(s) 245, 391
PspGI CCWGG 3 cut(s) 303, 375, 386
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 3 cut(s) 92, 209, 394
PsuI RGATCY 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SalI GTCGAC 1 cut(s) 267
SatI GCNGC 5 cut(s) 51, 54, 135, 294, 354
Sau3AI GATC 3 cut(s) 14, 123, 180
Sau96I GGNCC 3 cut(s) 92, 209, 394
ScrFI CCNGG 4 cut(s) 185, 305, 377, 388
SetI ASST 5 cut(s) 102, 121, 256, 316, 362
SfaNI GCATC 3 cut(s) 96, 156, 225
SinI GGWCC 2 cut(s) 92, 209
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SsiI CCGC 6 cut(s) 53, 79, 134, 293, 329, 347
SspMI CTAG 2 cut(s) 153, 218
StyD4I CCNGG 4 cut(s) 183, 303, 375, 386
StyI CCWWGG 1 cut(s) 364
TaiI ACGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 198, 268
TauI GCSGC 3 cut(s) 56, 137, 296
TseFI GTSAC 2 cut(s) 280, 334
TseI GCWGC 2 cut(s) 50, 353
Tsp45I GTSAC 2 cut(s) 280, 334
TspGWI ACGGA 1 cut(s) 27
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 92, 209
XagI CCTNNNNNAGG 1 cut(s) 216
XbaI TCTAGA 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 268
XspI CTAG 2 cut(s) 153, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.