Rh5CG470000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0022843
Physical Location & Seq
Forward (+)
65537461 .. 65537820
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG470000.1

Sequence Viewer

Length: 360 bp
ATGGCGGTGGCTAGTCGGATCCGGGTAGACTGGGTCAAGTGCTTTGGTCCTCTACTTGTGACGGCGGTATTGATGCTGACGGCTGGGATACATTTTGTTTTGCAACTAAGTCTGGCAATATGTACGGCGATGGATGCGGTGGTGACCAAGTTGGCGGAGATGACGGCCGGGAGAAGGTTGGCCGAGATATGGCGCCGGGTTTGGTCCTCGACGGCGGCAACGGTGTTTGGCTCGAGGTGGAGGATGTCCAAGTTTAGGTTTGTCCTAATTGGGCCGTGTGGGTTGTTACCAATAAGATGGCTGCTAGGGTTGCTCAGAGCTGGCATTTTTGGGCTCCTGTGTGGGCATCCTTGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.2

Weight (kDa)

11.38

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022843)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000881
rosa_multiflora Rmu_sc0004165.1_g000040
rosa_samantha Rh2AG373700 Rh5CG470000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 27
AciI CCGC 5 cut(s) 5, 65, 137, 155, 215
AclWI GGATC 2 cut(s) 13, 26
AcoI YGGCCR 2 cut(s) 165, 180
AcyI GRCGYC 1 cut(s) 193
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 3 cut(s) 174, 189, 255
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
AlwI GGATC 2 cut(s) 13, 26
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 3 cut(s) 165, 180, 272
ApeKI GCWGC 1 cut(s) 301
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 3 cut(s) 47, 204, 272
AsuC2I CCSGG 3 cut(s) 23, 169, 197
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 2 cut(s) 47, 204
BamHI GGATCC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 288
BccI CCATC 2 cut(s) 124, 291
BceAI ACGGC 6 cut(s) 78, 96, 141, 180, 228, 259
BciVI GTATCC 1 cut(s) 81
BcnI CCSGG 3 cut(s) 23, 169, 197
BfaI CTAG 2 cut(s) 12, 305
BfoI RGCGCY 1 cut(s) 196
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 2 cut(s) 216, 302
BlsI GCNGC 2 cut(s) 217, 303
Bme1390I CCNGG 3 cut(s) 23, 169, 197
Bme18I GGWCC 2 cut(s) 47, 204
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 3 cut(s) 47, 204, 272
BmiI GGNNCC 3 cut(s) 20, 194, 335
BmrFI CCNGG 3 cut(s) 23, 169, 197
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 3 cut(s) 63, 124, 355
BmuI ACTGGG 1 cut(s) 40
BpuMI CCSGG 3 cut(s) 23, 169, 197
BsaHI GRCGYC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 189, 255
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 3 cut(s) 139, 249, 346
BseLI CCNNNNNNNGG 3 cut(s) 174, 189, 255
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 35
BseX3I CGGCCG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 288
BseYI CCCAGC 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 3 cut(s) 167, 182, 274
BshNI GGYRCC 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 3 cut(s) 22, 168, 196
BslI CCNNNNNNNGG 3 cut(s) 174, 189, 255
BsnI GGCC 3 cut(s) 167, 182, 274
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 5 cut(s) 5, 65, 137, 155, 215
BspANI GGCC 3 cut(s) 167, 182, 274
BspCNI CTCAG 1 cut(s) 327
BspLI GGNNCC 3 cut(s) 20, 194, 335
BspPI GGATC 2 cut(s) 13, 26
BspT107I GGYRCC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 1 cut(s) 18
BssNI GRCGYC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 107, 314, 357
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 3 cut(s) 139, 249, 346
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 134, 310
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 3 cut(s) 21, 167, 195
BstV1I GCAGC 1 cut(s) 288
BstX2I RGATCY 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 18
BstZI CGGCCG 1 cut(s) 165
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 3 cut(s) 167, 182, 274
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 3 cut(s) 139, 249, 346
Cac8I GCNNGC 1 cut(s) 322
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 3 cut(s) 47, 204, 272
Csp6I GTAC 1 cut(s) 123
CviJI RGCY 9 cut(s) 11, 83, 167, 182, 231, 274, 301, 320, 334
CviKI_1 RGCY 9 cut(s) 11, 83, 167, 182, 231, 274, 301, 320, 334
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 3 cut(s) 107, 314, 357
DinI GGCGCC 1 cut(s) 194
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
EaeI YGGCCR 2 cut(s) 165, 180
EagI CGGCCG 1 cut(s) 165
EciI GGCGGA 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 47, 204
Eco52I CGGCCG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 232
Eco91I GGTNACC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 336
EgeI GGCGCC 1 cut(s) 194
EheI GGCGCC 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 350
FaiI YATR 2 cut(s) 121, 190
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 216, 302
FokI GGATG 3 cut(s) 146, 256, 333
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 216, 302
FspBI CTAG 2 cut(s) 12, 305
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 216, 302
GsaI CCCAGC 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 3 cut(s) 167, 182, 274
HapII CCGG 3 cut(s) 22, 168, 196
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 193
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HpaII CCGG 3 cut(s) 22, 168, 196
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 18, 317
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 310
HpyF3I CTNAG 3 cut(s) 107, 314, 357
Hsp92I GRCGYC 1 cut(s) 193
HspAI GCGC 1 cut(s) 193
KasI GGCGCC 1 cut(s) 192
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 339
LpnPI CCDG 8 cut(s) 16, 35, 69, 98, 181, 209, 306, 350
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 3 cut(s) 63, 124, 355
MaeI CTAG 2 cut(s) 12, 305
MaeIII GTNAC 3 cut(s) 58, 142, 285
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 1 cut(s) 267
Mly113I GGCGCC 1 cut(s) 193
MnlI CCTC 4 cut(s) 60, 217, 228, 234
MspI CCGG 3 cut(s) 22, 168, 196
MspR9I CCNGG 3 cut(s) 23, 169, 197
MwoI GCNNNNNNNGC 2 cut(s) 134, 310
NarI GGCGCC 1 cut(s) 193
NciI CCSGG 3 cut(s) 23, 169, 197
NdeII GATC 1 cut(s) 18
NlaIV GGNNCC 3 cut(s) 20, 194, 335
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 58, 142
PaeR7I CTCGAG 1 cut(s) 232
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 217, 303
PluTI GGCGCC 1 cut(s) 196
PspEI GGTNACC 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 83
PspN4I GGNNCC 3 cut(s) 20, 194, 335
PspPI GGNCC 3 cut(s) 47, 204, 272
PspXI VCTCGAGB 1 cut(s) 232
PsuI RGATCY 1 cut(s) 18
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 2 cut(s) 216, 302
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 3 cut(s) 47, 204, 272
ScrFI CCNGG 3 cut(s) 23, 169, 197
SduI GDGCHC 1 cut(s) 336
SetI ASST 4 cut(s) 179, 239, 260, 322
SfaNI GCATC 3 cut(s) 63, 124, 355
SfoI GGCGCC 1 cut(s) 194
Sfr274I CTCGAG 1 cut(s) 232
SinI GGWCC 2 cut(s) 47, 204
SlaI CTCGAG 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 1 cut(s) 267
SsiI CCGC 5 cut(s) 5, 65, 137, 155, 215
SspDI GGCGCC 1 cut(s) 192
SspMI CTAG 2 cut(s) 12, 305
StyD4I CCNGG 3 cut(s) 21, 167, 195
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 209, 233
TasI AATT 1 cut(s) 267
TauI GCSGC 1 cut(s) 218
TseFI GTSAC 2 cut(s) 58, 142
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 2 cut(s) 58, 142
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 47, 204
XhoI CTCGAG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 2 cut(s) 12, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.