Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004165.1

Orthogroup ID

OG0022843

Physical Location & Seq

Genomic Coordinates Forward (+)

125260 .. 130505

Gene Structure 5246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004165.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgcaaatctgtccagtctctgtggcctctccagtgggtgcttgggctccaaagactaaggccgactcagttgaaaaattgcattcaaccctggccaaggcgtgctctagactgcgccatgcagttgaggttttcgccctcaagagctctactaacggtggtcctatgcatgtgtccaggccatcccccaccgtgaaacaccgccgaaagaccattggctgcatcagatcgatctcaacccatattcaaatccggcagcctcaaactccactaaatctttctagatatagcgccctaaagcactgccaacccgacgaaggcaacgatcagtgtgaaaagccggaggtcctgctgacaccaactcatctagccattgtgatggagtatgctgctggaggagaactctatgagagaatatgcaaagccagtagatttagtgagaatgaggatcttggatccatatcaggtcgttggtcctcaggttgggatgcccgaaggaggtttgatctatggggcggcatggtcgtcggcgtccagagatatttggatgcagatgatgatggcggaggttggtcggatccgggcagactgggtcgagtgatttggtcctttactatggacgacgacattgatgctgactgctggatacgttttggcttgcgtcgactggctttggtgactggagtggcggctctaagcctggcggtaggtacggcgatggacgcggtggtgaccacgatggcggtggcagcgacgaccaaagtggcagcaacctccccatggattgcgccagggtttcacaaggctgggcctcttgggctactaagtggtggtgggctttcatgtgggcttggttattttgggcctacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

290

Amino Acids

31.16

Weight (kDa)

8.79

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022843)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000881
rosa_multiflora	Rmu_sc0004165.1_g000040
rosa_samantha	Rh2AG373700 Rh5CG470000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	664
AccII	CGCG	1 cut(s)	725
AciI	CCGC	7 cut(s)	202, 516, 564, 689, 704, 725, 743
AclWI	GGATC	5 cut(s)	450, 456, 463, 572, 585
AcoI	YGGCCR	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	5 cut(s)	97, 317, 483, 498, 780
AgsI	TTSAA	3 cut(s)	74, 87, 248
AjnI	CCWGG	4 cut(s)	90, 176, 699, 790
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw21I	GWGCWC	2 cut(s)	107, 149
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	5 cut(s)	450, 456, 463, 572, 585
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	6 cut(s)	24, 60, 93, 179, 809, 863
ApeKI	GCWGC	5 cut(s)	219, 256, 389, 749, 767
AspLEI	GCGC	3 cut(s)	117, 293, 790
AspS9I	GGNCC	6 cut(s)	161, 346, 474, 606, 809, 863
AsuC2I	CCSGG	1 cut(s)	582
AsuHPI	GGTGA	2 cut(s)	688, 742
AvaII	GGWCC	4 cut(s)	161, 346, 474, 606
AxyI	CCTNAGG	1 cut(s)	478
BalI	TGGCCA	1 cut(s)	95
BamHI	GGATCC	2 cut(s)	455, 577
BanII	GRGCYC	2 cut(s)	49, 149
Bbv12I	GWGCWC	2 cut(s)	107, 149
BbvI	GCAGC	5 cut(s)	206, 268, 376, 761, 779
BccI	CCATC	5 cut(s)	190, 373, 554, 712, 733
BceAI	ACGGC	1 cut(s)	729
BcgI	CGANNNNNNTGC	4 cut(s)	508, 542, 614, 648
BciT130I	CCWGG	4 cut(s)	92, 178, 701, 792
BciVI	GTATCC	1 cut(s)	639
BcnI	CCSGG	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	3 cut(s)	108, 282, 368
BfoI	RGCGCY	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	639
BglI	GCCNNNNNGGC	1 cut(s)	817
BisI	GCNGC	7 cut(s)	220, 257, 390, 517, 690, 750, 768
BlsI	GCNGC	7 cut(s)	221, 258, 391, 518, 691, 751, 769
Bme1390I	CCNGG	5 cut(s)	92, 178, 582, 701, 792
Bme18I	GGWCC	4 cut(s)	161, 346, 474, 606
BmgT120I	GGNCC	6 cut(s)	161, 346, 474, 606, 809, 863
BmiI	GGNNCC	3 cut(s)	48, 457, 579
BmrFI	CCNGG	5 cut(s)	92, 178, 582, 701, 792
BmrI	ACTGGG	1 cut(s)	599
BmsI	GCATC	4 cut(s)	231, 478, 538, 622
BmuI	ACTGGG	1 cut(s)	599
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
BpmI	CTGGAG	3 cut(s)	15, 414, 702
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	582
Bsa29I	ATCGAT	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	4 cut(s)	90, 96, 779, 791
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 317, 483, 498, 780
Bse1I	ACTGG	6 cut(s)	14, 32, 426, 594, 672, 685
Bse21I	CCTNAGG	1 cut(s)	478
Bse8I	GATNNNNATC	1 cut(s)	460
BseBI	CCWGG	4 cut(s)	92, 178, 701, 792
BseCI	ATCGAT	1 cut(s)	230
BseDI	CCNNGG	4 cut(s)	90, 96, 779, 791
BseGI	GGATG	3 cut(s)	182, 493, 553
BseJI	GATNNNNATC	1 cut(s)	460
BseLI	CCNNNNNNNGG	5 cut(s)	97, 317, 483, 498, 780
BseMII	CTCAG	2 cut(s)	81, 492
BseNI	ACTGG	6 cut(s)	14, 32, 426, 594, 672, 685
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	5 cut(s)	206, 268, 376, 761, 779
BseYI	CCCAGC	1 cut(s)	806
Bsh1236I	CGCG	1 cut(s)	725
BshFI	GGCC	6 cut(s)	26, 62, 95, 181, 811, 865
BshVI	ATCGAT	1 cut(s)	230
BsiHKAI	GWGCWC	2 cut(s)	107, 149
BsiSI	CCGG	3 cut(s)	253, 341, 581
BslI	CCNNNNNNNGG	5 cut(s)	97, 317, 483, 498, 780
BsmAI	GTCTC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	6 cut(s)	26, 62, 95, 181, 811, 865
Bsp1286I	GDGCHC	3 cut(s)	49, 107, 149
Bsp143I	GATC	7 cut(s)	227, 231, 325, 448, 455, 505, 577
Bsp19I	CCATGG	1 cut(s)	779
BspACI	CCGC	7 cut(s)	202, 516, 564, 689, 704, 725, 743
BspANI	GGCC	6 cut(s)	26, 62, 95, 181, 811, 865
BspCNI	CTCAG	2 cut(s)	80, 491
BspDI	ATCGAT	1 cut(s)	230
BspFNI	CGCG	1 cut(s)	725
BspLI	GGNNCC	3 cut(s)	48, 457, 579
BspPI	GGATC	5 cut(s)	450, 456, 463, 572, 585
BsrI	ACTGG	6 cut(s)	14, 32, 426, 594, 672, 685
BssECI	CCNNGG	4 cut(s)	90, 96, 779, 791
BssMI	GATC	7 cut(s)	227, 231, 325, 448, 455, 505, 577
BssNI	GRCGYC	1 cut(s)	531
BssT1I	CCWWGG	2 cut(s)	96, 779
Bst2UI	CCWGG	4 cut(s)	92, 178, 701, 792
Bst4CI	ACNGT	2 cut(s)	158, 193
BstACI	GRCGYC	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	103, 659
BstDEI	CTNAG	5 cut(s)	57, 67, 478, 695, 824
BstDSI	CCRYGG	1 cut(s)	779
BstEII	GGTNACC	1 cut(s)	730
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	3 cut(s)	182, 493, 553
BstFNI	CGCG	1 cut(s)	725
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	3 cut(s)	117, 293, 790
BstKTI	GATC	7 cut(s)	230, 234, 328, 451, 458, 508, 580
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	7 cut(s)	227, 231, 325, 448, 455, 505, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	722, 749, 817
BstNI	CCWGG	4 cut(s)	92, 178, 701, 792
BstNSI	RCATGY	1 cut(s)	173
BstPI	GGTNACC	1 cut(s)	730
BstSCI	CCNGG	5 cut(s)	90, 176, 580, 699, 790
BstUI	CGCG	1 cut(s)	725
BstV1I	GCAGC	5 cut(s)	206, 268, 376, 761, 779
BstX2I	RGATCY	3 cut(s)	448, 455, 577
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	3 cut(s)	448, 455, 577
Bsu15I	ATCGAT	1 cut(s)	230
Bsu36I	CCTNAGG	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	639
BsuRI	GGCC	6 cut(s)	26, 62, 95, 181, 811, 865
BsuTUI	ATCGAT	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	779
BtgZI	GCGATG	1 cut(s)	731
BtsCI	GGATG	3 cut(s)	182, 493, 553
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	3 cut(s)	39, 301, 335
Cac8I	GCNNGC	2 cut(s)	103, 659
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	3 cut(s)	117, 293, 790
Cfr13I	GGNCC	6 cut(s)	161, 346, 474, 606, 809, 863
ClaI	ATCGAT	1 cut(s)	230
CseI	GACGC	3 cut(s)	520, 650, 731
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	6 cut(s)	119, 170, 520, 780, 843, 870
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	5 cut(s)	57, 67, 478, 695, 824
DpnI	GATC	7 cut(s)	229, 233, 327, 450, 457, 507, 579
DpnII	GATC	7 cut(s)	227, 231, 325, 448, 455, 505, 577
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	96, 779
Eco24I	GRGCYC	2 cut(s)	49, 149
Eco47I	GGWCC	4 cut(s)	161, 346, 474, 606
Eco53kI	GAGCTC	1 cut(s)	147
Eco81I	CCTNAGG	1 cut(s)	478
Eco91I	GGTNACC	1 cut(s)	730
EcoICRI	GAGCTC	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	730
EcoRII	CCWGG	4 cut(s)	90, 176, 699, 790
EcoT14I	CCWWGG	2 cut(s)	96, 779
EcoT22I	ATGCAT	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	49, 149
ErhI	CCWWGG	2 cut(s)	96, 779
FaeI	CATG	6 cut(s)	122, 173, 523, 783, 846, 873
FatI	CATG	6 cut(s)	118, 169, 519, 779, 842, 869
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	7 cut(s)	220, 257, 390, 517, 690, 750, 768
FokI	GGATG	3 cut(s)	169, 500, 560
FriOI	GRGCYC	2 cut(s)	49, 149
Fsp4HI	GCNGC	7 cut(s)	220, 257, 390, 517, 690, 750, 768
FspBI	CTAG	3 cut(s)	108, 282, 368
GlaI	GCGC	3 cut(s)	116, 292, 789
GluI	GCNGC	7 cut(s)	220, 257, 390, 517, 690, 750, 768
GsaI	CCCAGC	1 cut(s)	810
GsuI	CTGGAG	3 cut(s)	15, 414, 702
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	6 cut(s)	26, 62, 95, 181, 811, 865
HapII	CCGG	3 cut(s)	253, 341, 581
HgaI	GACGC	3 cut(s)	520, 650, 731
HhaI	GCGC	3 cut(s)	117, 293, 790
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	6 cut(s)	122, 173, 523, 783, 846, 873
Hin6I	GCGC	3 cut(s)	115, 291, 788
HinP1I	GCGC	3 cut(s)	115, 291, 788
HincII	GTYRAC	1 cut(s)	665
HindII	GTYRAC	1 cut(s)	665
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	3 cut(s)	253, 341, 581
HphI	GGTGA	2 cut(s)	688, 742
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	2 cut(s)	227, 577
Hpy188III	TCNNGA	4 cut(s)	108, 142, 282, 535
Hpy8I	GTNNAC	1 cut(s)	665
Hpy99I	CGWCG	5 cut(s)	317, 530, 626, 666, 757
HpyAV	CCTTC	2 cut(s)	311, 489
HpyCH4III	ACNGT	2 cut(s)	158, 193
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	7 cut(s)	4, 82, 122, 169, 222, 420, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	722, 749, 817
HpyF3I	CTNAG	5 cut(s)	57, 67, 478, 695, 824
HpySE526I	ACGT	1 cut(s)	649
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	6 cut(s)	122, 173, 523, 783, 846, 873
HspAI	GCGC	3 cut(s)	115, 291, 788
Kzo9I	GATC	7 cut(s)	227, 231, 325, 448, 455, 505, 577
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	5 cut(s)	206, 268, 376, 761, 779
LweI	GCATC	4 cut(s)	231, 478, 538, 622
MaeI	CTAG	3 cut(s)	108, 282, 368
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	2 cut(s)	676, 730
MalI	GATC	7 cut(s)	229, 233, 327, 450, 457, 507, 579
MboI	GATC	7 cut(s)	227, 231, 325, 448, 455, 505, 577
MflI	RGATCY	3 cut(s)	448, 455, 577
MhlI	GDGCHC	3 cut(s)	49, 107, 149
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	555
Mox20I	TGGCCA	1 cut(s)	95
Mph1103I	ATGCAT	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	3 cut(s)	253, 341, 581
MspR9I	CCNGG	5 cut(s)	92, 178, 582, 701, 792
Mva1269I	GAATGC	1 cut(s)	82
MvaI	CCWGG	4 cut(s)	92, 178, 701, 792
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	3 cut(s)	722, 749, 817
NciI	CCSGG	1 cut(s)	582
NcoI	CCATGG	1 cut(s)	779
NdeII	GATC	7 cut(s)	227, 231, 325, 448, 455, 505, 577
NlaIII	CATG	6 cut(s)	122, 173, 523, 783, 846, 873
NlaIV	GGNNCC	3 cut(s)	48, 457, 579
NmuCI	GTSAC	2 cut(s)	676, 730
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	1 cut(s)	82
PflFI	GACNNNGTC	1 cut(s)	591
PkrI	GCNGC	7 cut(s)	221, 258, 391, 518, 691, 751, 769
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	4 cut(s)	90, 176, 699, 790
PspEI	GGTNACC	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	4 cut(s)	90, 176, 699, 790
PspN4I	GGNNCC	3 cut(s)	48, 457, 579
PspPI	GGNCC	6 cut(s)	161, 346, 474, 606, 809, 863
PspPPI	RGGWCCY	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	3 cut(s)	448, 455, 577
PsyI	GACNNNGTC	1 cut(s)	591
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	149
SalI	GTCGAC	1 cut(s)	663
SatI	GCNGC	7 cut(s)	220, 257, 390, 517, 690, 750, 768
Sau3AI	GATC	7 cut(s)	227, 231, 325, 448, 455, 505, 577
Sau96I	GGNCC	6 cut(s)	161, 346, 474, 606, 809, 863
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	5 cut(s)	92, 178, 582, 701, 792
SduI	GDGCHC	3 cut(s)	49, 107, 149
SfaNI	GCATC	4 cut(s)	231, 478, 538, 622
SinI	GGWCC	4 cut(s)	161, 346, 474, 606
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	7 cut(s)	202, 516, 564, 689, 704, 725, 743
SspMI	CTAG	3 cut(s)	108, 282, 368
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	5 cut(s)	90, 176, 580, 699, 790
StyI	CCWWGG	2 cut(s)	96, 779
TaaI	ACNGT	2 cut(s)	158, 193
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	3 cut(s)	230, 595, 664
TasI	AATT	1 cut(s)	77
TauI	GCSGC	2 cut(s)	519, 692
TscAI	CASTG	3 cut(s)	39, 308, 335
TseFI	GTSAC	2 cut(s)	676, 730
TseI	GCWGC	5 cut(s)	219, 256, 389, 749, 767
Tsp45I	GTSAC	2 cut(s)	676, 730
TspDTI	ATGAA	1 cut(s)	831
TspRI	CASTG	3 cut(s)	39, 308, 335
Tth111I	GACNNNGTC	1 cut(s)	591
VpaK11BI	GGWCC	4 cut(s)	161, 346, 474, 606
XagI	CCTNNNNNAGG	1 cut(s)	95
XbaI	TCTAGA	2 cut(s)	107, 281
XceI	RCATGY	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	2 cut(s)	39, 742
XmiI	GTMKAC	1 cut(s)	664
XspI	CTAG	3 cut(s)	108, 282, 368
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.