Rh2AG373700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0022843
Physical Location & Seq
Reverse (-)
55547344 .. 55547625
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG373700.1

Sequence Viewer

Length: 282 bp
ATGGCGGTGGCTGGTGGGATCTGGCCAGACGGGGTCGAGTGTTGTGATCCTCCACTTATGACGGAGGCATTGATGCTGACAGTTGGAATAAGCCTGATGATGGGTATGGCGATGGACGCGGTGGTGACCAAGTTGGCGGTGATGACGGCCGGGACAAGGTTGGCCGTGCTATGGCGCCAAGTTTGGTCCTCGACGGCAAAAGCGTTGTTTGGCCCGAGGTGGAGGATGCCCAAGCTTGGGTTTGTCCTAATTGGGTCGTGTGGGTTGTTACCAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.01

Weight (kDa)

9.49

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022843)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000881
rosa_multiflora Rmu_sc0004165.1_g000040
rosa_samantha Rh2AG373700 Rh5CG470000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AccII CGCG 1 cut(s) 119
AciI CCGC 3 cut(s) 5, 119, 137
AclWI GGATC 2 cut(s) 26, 41
AcoI YGGCCR 3 cut(s) 23, 147, 162
AcyI GRCGYC 1 cut(s) 175
AfiI CCNNNNNNNGG 5 cut(s) 100, 156, 171, 236, 237
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
AlwI GGATC 2 cut(s) 26, 41
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 4 cut(s) 23, 147, 162, 211
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 186, 212
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 136, 151
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 25
BanI GGYRCC 1 cut(s) 174
BccI CCATC 2 cut(s) 94, 106
BceAI ACGGC 3 cut(s) 149, 162, 210
BcnI CCSGG 1 cut(s) 151
BfoI RGCGCY 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 186, 212
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 63, 216
BpuMI CCSGG 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 156, 171, 236, 237
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 5 cut(s) 100, 156, 171, 236, 237
BseX3I CGGCCG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 4 cut(s) 25, 149, 164, 213
BshNI GGYRCC 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 5 cut(s) 100, 156, 171, 236, 237
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 4 cut(s) 25, 149, 164, 213
BsoBI CYCGRG 1 cut(s) 214
Bsp143I GATC 2 cut(s) 18, 46
BspACI CCGC 3 cut(s) 5, 119, 137
BspANI GGCC 4 cut(s) 25, 149, 164, 213
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 2 cut(s) 26, 41
BspT107I GGYRCC 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 2 cut(s) 18, 46
BssNI GRCGYC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 175
BstEII GGTNACC 1 cut(s) 124
BstF5I GGATG 1 cut(s) 231
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 21, 49
BstMBI GATC 2 cut(s) 18, 46
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstPI GGTNACC 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 149
BstUI CGCG 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BstZI CGGCCG 1 cut(s) 147
BsuRI GGCC 4 cut(s) 25, 149, 164, 213
BtgZI GCGATG 1 cut(s) 125
BtsCI GGATG 1 cut(s) 231
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 186, 212
CseI GACGC 1 cut(s) 125
CviJI RGCY 7 cut(s) 11, 25, 93, 149, 164, 213, 235
CviKI_1 RGCY 7 cut(s) 11, 25, 93, 149, 164, 213, 235
DinI GGCGCC 1 cut(s) 176
DpnI GATC 2 cut(s) 20, 48
DpnII GATC 2 cut(s) 18, 46
EaeI YGGCCR 3 cut(s) 23, 147, 162
EagI CGGCCG 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 186
Eco52I CGGCCG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 214
Eco91I GGTNACC 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 124
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
FaiI YATR 3 cut(s) 59, 107, 172
FaqI GGGAC 1 cut(s) 166
FokI GGATG 1 cut(s) 238
GlaI GCGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 4 cut(s) 25, 149, 164, 213
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 175
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 233
HpaII CCGG 1 cut(s) 150
HphI GGTGA 2 cut(s) 136, 151
Hpy99I CGWCG 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 175
HspAI GCGC 1 cut(s) 175
KasI GGCGCC 1 cut(s) 174
Kzo9I GATC 2 cut(s) 18, 46
LpnPI CCDG 4 cut(s) 7, 39, 107, 163
LweI GCATC 2 cut(s) 63, 216
MaeIII GTNAC 2 cut(s) 124, 267
MalI GATC 2 cut(s) 20, 48
MboI GATC 2 cut(s) 18, 46
MflI RGATCY 1 cut(s) 18
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 1 cut(s) 249
MluNI TGGCCA 1 cut(s) 25
Mly113I GGCGCC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 5 cut(s) 58, 60, 199, 210, 216
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
Msp20I TGGCCA 1 cut(s) 25
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 116
NarI GGCGCC 1 cut(s) 175
NciI CCSGG 1 cut(s) 151
NdeII GATC 2 cut(s) 18, 46
NlaIV GGNNCC 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PflFI GACNNNGTC 1 cut(s) 32
PluTI GGCGCC 1 cut(s) 178
PspEI GGTNACC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 186, 212
PsuI RGATCY 1 cut(s) 18
PsyI GACNNNGTC 1 cut(s) 32
Sau3AI GATC 2 cut(s) 18, 46
Sau96I GGNCC 2 cut(s) 186, 212
ScrFI CCNGG 1 cut(s) 151
SetI ASST 3 cut(s) 161, 221, 237
SfaNI GCATC 2 cut(s) 63, 216
SfoI GGCGCC 1 cut(s) 176
SinI GGWCC 1 cut(s) 186
Sse9I AATT 1 cut(s) 249
SsiI CCGC 3 cut(s) 5, 119, 137
SspDI GGCGCC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 2 cut(s) 36, 191
TasI AATT 1 cut(s) 249
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspGWI ACGGA 1 cut(s) 77
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.