Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0021387

Physical Location & Seq

Genomic Coordinates Forward (+)

33770473 .. 33771080

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002418

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGAGAAGTTTTGAAACGAGTTACGAAAGAGCACTTGCAAAGAGCATACAAGATAAAGGACTGGGAGGATGATAATGACTTTCTAGTTCAGCTATGCAAATCATCTGGAAAGCTTTTGAAGGGTGGCGAACCTCACTTGATGACAGCAGCAAAGATGAGCCTCCATGATTGGCAGAGGGGTAAGATACCAATTTTTATGCCTCCTCCACATAGAGAATTGCCATCAGAAGAGCCAGCTCAGCAAATTAGTGTCCAGGTTCCAAGGGATCTTTATAATGAAATTGAGTTAAAGGAATCCAAGACGGGGAACCTTCCTGAACATGATGTTGAGGCTGAGACATCTGAGAAGTCTGACGATCGGACTTGGAGGATGAGATGTCTGAGCAGTCTTCTGGCGCAGAAGATGAGACCTCTGAGTGGATTTCCTCGGCAGAGGACCAAAATTACTTGTGATCCTTCCAGAAACTGTCGATGCTCCAACAGAACCCCATCGTCGATAGTTACTTTTTGTAGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042254 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NGP1NT

Protein Analysis

174

Amino Acids

19.9

Weight (kDa)

8.75

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021387)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0433491
rosa_laevigata	RLG00000002418
rosa_multiflora	Rmu_sc0000759.1_g000002
rosa_samantha	Rh4AG323600 Rh4DG328100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AclWI	GGATC	2 cut(s)	276, 449
AfiI	CCNNNNNNNGG	2 cut(s)	306, 419
AgsI	TTSAA	2 cut(s)	16, 121
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	3 cut(s)	94, 115, 239
AluI	AGCT	3 cut(s)	94, 115, 239
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	332, 403
AlwI	GGATC	2 cut(s)	276, 449
AlwNI	CAGNNNCTG	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	2 cut(s)	232, 499
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	332, 403
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	1 cut(s)	150
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	2 cut(s)	261, 311
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	464
BmuI	ACTGGG	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	383
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	263, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 419
Bse1I	ACTGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	263, 428
BseGI	GGATG	2 cut(s)	76, 378
BseLI	CCNNNNNNNGG	2 cut(s)	306, 419
BseMII	CTCAG	5 cut(s)	254, 327, 336, 374, 407
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	361
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	306, 419
BsmAI	GTCTC	2 cut(s)	332, 403
Bso31I	GGTCTC	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	268, 358, 454
Bsp1720I	GCTNAGC	1 cut(s)	240
BspCNI	CTCAG	5 cut(s)	253, 328, 337, 375, 408
BspLI	GGNNCC	2 cut(s)	261, 311
BspPI	GGATC	2 cut(s)	276, 449
BspQI	GCTCTTC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	263, 428
BssMI	GATC	3 cut(s)	268, 358, 454
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	5 cut(s)	240, 336, 345, 383, 416
BstF5I	GGATG	2 cut(s)	76, 378
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	3 cut(s)	271, 361, 457
BstMAI	GTCTC	2 cut(s)	332, 403
BstMBI	GATC	3 cut(s)	268, 358, 454
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	76, 378
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	468
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	438
CviAII	CATG	2 cut(s)	167, 323
CviJI	RGCY	6 cut(s)	94, 115, 162, 235, 239, 335
CviKI_1	RGCY	6 cut(s)	94, 115, 162, 235, 239, 335
DdeI	CTNAG	5 cut(s)	240, 336, 345, 383, 416
DpnI	GATC	3 cut(s)	270, 360, 456
DpnII	GATC	3 cut(s)	268, 358, 454
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	2 cut(s)	170, 326
FaiI	YATR	8 cut(s)	49, 97, 168, 200, 213, 276, 324, 520
FatI	CATG	2 cut(s)	166, 322
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	2 cut(s)	83, 385
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	170, 326
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	1 cut(s)	296
Hpy188I	TCNGA	6 cut(s)	229, 346, 355, 363, 384, 417
Hpy188III	TCNNGA	3 cut(s)	108, 317, 462
Hpy99I	CGWCG	1 cut(s)	499
HpyAV	CCTTC	3 cut(s)	115, 323, 468
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	2 cut(s)	40, 99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	5 cut(s)	240, 336, 345, 383, 416
Hsp92II	CATG	2 cut(s)	170, 326
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	268, 358, 454
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	482
LpnPI	CCDG	8 cut(s)	49, 93, 242, 249, 269, 330, 380, 475
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	464
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	22, 502
MalI	GATC	3 cut(s)	270, 360, 456
MboI	GATC	3 cut(s)	268, 358, 454
MboII	GAAGA	3 cut(s)	242, 383, 415
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	5 cut(s)	192, 218, 246, 282, 444
MmeI	TCCRAC	1 cut(s)	504
MseI	TTAA	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	3 cut(s)	268, 358, 454
NlaIII	CATG	2 cut(s)	170, 326
NlaIV	GGNNCC	2 cut(s)	261, 311
NmeAIII	GCCGAG	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	151
Ple19I	CGATCG	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	261, 311
PspPI	GGNCC	1 cut(s)	438
PstNI	CAGNNNCTG	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	268
PvuI	CGATCG	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	268, 358, 454
Sau96I	GGNCC	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	7 cut(s)	96, 117, 136, 241, 261, 315, 415
SfaNI	GCATC	1 cut(s)	464
SinI	GGWCC	1 cut(s)	438
Sse9I	AATT	5 cut(s)	192, 218, 246, 282, 444
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	2 cut(s)	472, 497
TasI	AATT	5 cut(s)	192, 218, 246, 282, 444
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	438
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.