Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000759.1

Orthogroup ID

OG0021387

Physical Location & Seq

Genomic Coordinates Reverse (-)

1455 .. 4860

Gene Structure 3406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000759.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgctcttggacaagctgtggctgcagggattgaaagtgtcaatccaggtgattactcctaccgggactaggaagctactggtacgcgtcacaaacttgcaggatgcttcagaacacataggcgaagttttgaaacgagttaagaaagagcacttgcaaagagcatataagataaaagactgggaggatgataatgactttctagttcagctatgcaaatcatccggaaagcttttgaagggtggggaacctgacctgatgacagcggcaaagatgatcctccatgattggcagaggggtaagataccattttttgtgcctccaccacaaagagaattgccatcaggggagcatcctgccaatgaagtagaaaacgatacactaatagataataatcaagcatcagcatttagagccattgcaaatgttatttcatcccagcagcaaatgagtgtcccgttcaaagggatctttataacgaaaatgagtgccccagttcaaagggatctttataacgaaaatgagttgaagggttctaagacggctgaggctgaacatgatgttgaggctgagacatctgagaagtctgaggacttggaggatgaggtgtctgacgcagaagatgagacgtccgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042254 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NGP1NT

Protein Analysis

212

Amino Acids

23.9

Weight (kDa)

4.95

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021387)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0433491
rosa_laevigata	RLG00000002418
rosa_multiflora	Rmu_sc0000759.1_g000002
rosa_samantha	Rh4AG323600 Rh4DG328100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	476, 513
AatII	GACGTC	1 cut(s)	632
AccII	CGCG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	3 cut(s)	271, 476, 513
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	629
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	69, 464
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	6 cut(s)	34, 133, 238, 463, 500, 529
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	4 cut(s)	16, 76, 211, 232
AluI	AGCT	4 cut(s)	16, 76, 211, 232
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	566, 620
AlwI	GGATC	3 cut(s)	271, 476, 513
Aor13HI	TCCGGA	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	22, 442
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	9, 454
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	558
BciT130I	CCWGG	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	566, 620
BfaI	CTAG	2 cut(s)	69, 203
BfmI	CTRYAG	1 cut(s)	23
BisI	GCNGC	3 cut(s)	23, 267, 443
BlsI	GCNGC	3 cut(s)	24, 268, 444
Bme1390I	CCNGG	2 cut(s)	47, 64
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	2 cut(s)	47, 64
BmrI	ACTGGG	2 cut(s)	190, 488
BmsI	GCATC	3 cut(s)	94, 361, 410
BmuI	ACTGGG	2 cut(s)	190, 488
Bpu10I	CCTNAGC	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	629
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 464
Bse1I	ACTGG	3 cut(s)	84, 185, 494
Bse3DI	GCAATG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	47
BseGI	GGATG	6 cut(s)	109, 193, 221, 352, 434, 607
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	69, 464
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	4 cut(s)	537, 561, 570, 579
BseNI	ACTGG	3 cut(s)	84, 185, 494
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	2 cut(s)	9, 454
BseYI	CCCAGC	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	63, 225
BslFI	GGGAC	2 cut(s)	79, 440
BslI	CCNNNNNNNGG	2 cut(s)	69, 464
BsmAI	GTCTC	2 cut(s)	566, 620
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	2 cut(s)	79, 440
Bsp1286I	GDGCHC	2 cut(s)	153, 493
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	276, 468, 505
BspACI	CCGC	1 cut(s)	266
BspCNI	CTCAG	4 cut(s)	538, 562, 571, 580
BspEI	TCCGGA	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	3 cut(s)	271, 476, 513
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	3 cut(s)	84, 185, 494
BssMI	GATC	3 cut(s)	276, 468, 505
BssNI	GRCGYC	1 cut(s)	629
Bst2UI	CCWGG	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	629
BstDEI	CTNAG	5 cut(s)	537, 546, 570, 579, 588
BstF5I	GGATG	6 cut(s)	109, 193, 221, 352, 434, 607
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	3 cut(s)	279, 471, 508
BstMAI	GTCTC	2 cut(s)	566, 620
BstMBI	GATC	3 cut(s)	276, 468, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 413
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	45, 62
BstSFI	CTRYAG	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	9, 454
BstX2I	RGATCY	2 cut(s)	468, 505
BstYI	RGATCY	2 cut(s)	468, 505
BtsCI	GGATG	6 cut(s)	109, 193, 221, 352, 434, 607
CseI	GACGC	2 cut(s)	76, 623
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	2 cut(s)	284, 557
CviJI	RGCY	9 cut(s)	16, 22, 76, 211, 232, 416, 545, 551, 569
CviKI_1	RGCY	9 cut(s)	16, 22, 76, 211, 232, 416, 545, 551, 569
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	5 cut(s)	537, 546, 570, 579, 588
DpnI	GATC	3 cut(s)	278, 470, 507
DpnII	GATC	3 cut(s)	276, 468, 505
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	2 cut(s)	287, 560
FaiI	YATR	8 cut(s)	119, 166, 168, 214, 285, 476, 513, 558
FaqI	GGGAC	2 cut(s)	79, 440
FatI	CATG	2 cut(s)	283, 556
Fnu4HI	GCNGC	3 cut(s)	23, 267, 443
FokI	GGATG	6 cut(s)	116, 200, 208, 339, 421, 614
Fsp4HI	GCNGC	3 cut(s)	23, 267, 443
FspBI	CTAG	2 cut(s)	69, 203
GluI	GCNGC	3 cut(s)	23, 267, 443
GsaI	CCCAGC	1 cut(s)	442
HapII	CCGG	2 cut(s)	63, 225
HgaI	GACGC	2 cut(s)	76, 623
Hin1I	GRCGYC	1 cut(s)	629
Hin1II	CATG	2 cut(s)	287, 560
HindIII	AAGCTT	1 cut(s)	230
HpaII	CCGG	2 cut(s)	63, 225
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	112, 580, 589, 613, 634
Hpy188III	TCNNGA	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	232, 523
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	5 cut(s)	25, 100, 157, 216, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 413
HpyF3I	CTNAG	5 cut(s)	537, 546, 570, 579, 588
HpySE526I	ACGT	1 cut(s)	629
Hsp92I	GRCGYC	1 cut(s)	629
Hsp92II	CATG	2 cut(s)	287, 560
Kpn2I	TCCGGA	1 cut(s)	224
Kzo9I	GATC	3 cut(s)	276, 468, 505
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	2 cut(s)	9, 454
LweI	GCATC	3 cut(s)	94, 361, 410
MaeI	CTAG	2 cut(s)	69, 203
MaeII	ACGT	1 cut(s)	629
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	3 cut(s)	278, 470, 507
MboI	GATC	3 cut(s)	276, 468, 505
MboII	GAAGA	1 cut(s)	632
MflI	RGATCY	2 cut(s)	468, 505
MhlI	GDGCHC	2 cut(s)	153, 493
MluCI	AATT	1 cut(s)	335
MluI	ACGCGT	1 cut(s)	85
MnlI	CCTC	9 cut(s)	178, 288, 290, 330, 541, 559, 583, 592, 598
MroI	TCCGGA	1 cut(s)	224
MseI	TTAA	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	63, 225
MspR9I	CCNGG	2 cut(s)	47, 64
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	22, 413
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	3 cut(s)	276, 468, 505
NlaIII	CATG	2 cut(s)	287, 560
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	24, 268, 444
PsiI	TTATAA	2 cut(s)	476, 513
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	468, 505
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	3 cut(s)	23, 267, 443
Sau3AI	GATC	3 cut(s)	276, 468, 505
ScrFI	CCNGG	2 cut(s)	47, 64
SduI	GDGCHC	2 cut(s)	153, 493
SetI	ASST	9 cut(s)	18, 51, 78, 213, 234, 253, 258, 609, 632
SfaNI	GCATC	3 cut(s)	94, 361, 410
SfcI	CTRYAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	335
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	2 cut(s)	69, 203
StyD4I	CCNGG	2 cut(s)	45, 62
TaiI	ACGT	1 cut(s)	632
TasI	AATT	1 cut(s)	335
TauI	GCSGC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	2 cut(s)	22, 442
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	378, 423
XspI	CTAG	2 cut(s)	69, 203
ZraI	GACGTC	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.