Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0021387

Physical Location & Seq

Genomic Coordinates Forward (+)

55160076 .. 55163139

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG328100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTTGAGAAGGGACAGAGTAAACGCATTTGGGGCGAGACTCCTCAGATGTTGTTGTCCAGCTTTCTTTTACAGGTTTTGGATGCAAGGGATCCGCAAGGTACAAGATGTTACCACTTAGAGAAGCATTTGAAAGAGCATTGCAAGCATAAACACTTGATTCTCTTGTTAAACAAGTGTGATTTGGTTCCCGCTTGGGCAACAAAAGGTTGGCTAAAAGTATTGTCGGCGGAGTTTCCAACTCTTGCATTTCACGCCAGCATCAACAAGTCATTTGGCAAGGGTTCTCTTCTATCTGTTCATCTGTTATCAACACACTGTGAACGAAAAATGTTTGCAAGGTTGGTCCTATTCCAGGGGAAACTAAAGTATATTGTACTGAAGGGCGTGGTACGTGTCACAAACTTGCAGGATGCTTCAGAACACATAGGAGAAGTATTGAAACGAGTTAAGAAAGAGCACTTGCAAAGAGCATATAAGATAAAAGACTGGGAGGATGATAATGACTTTCTAGTTCAGCTATGCAAATCATCCGGAAAGCTTTTGAAGGGTGGGGAACCTGACCTGATGACAGCGGCAAAGATGATCCTCCATGATTGGCAGAGGGGTAAGATACCATTTTTTGTGCCTCCTCCACAAAGAGAATTGCCATCAGGGAAGCATCCTGCCAATGAAGGTTCTAAGACGGAGAACCTTCCTGAACATGATGTTGAGGCTGAGACATCTGAGAAGTCTGAGGACTTGGAGGATGAGGTGTCTGAGCAGTCTTCTGACGCAGAAGATGAGACATCCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042254 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NGP1NT

Protein Analysis

265

Amino Acids

30.16

Weight (kDa)

6.9

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021387)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0433491
rosa_laevigata	RLG00000002418
rosa_multiflora	Rmu_sc0000759.1_g000002
rosa_samantha	Rh4AG323600 Rh4DG328100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	533
AciI	CCGC	4 cut(s)	95, 192, 230, 575
AclWI	GGATC	3 cut(s)	86, 99, 580
AcuI	CTGAAG	2 cut(s)	401, 402
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	103, 378, 393
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	133, 442, 547
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	3 cut(s)	63, 520, 541
AluI	AGCT	3 cut(s)	63, 520, 541
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	3 cut(s)	32, 713, 779
AlwI	GGATC	3 cut(s)	86, 99, 580
Aor13HI	TCCGGA	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	462
BccI	CCATC	1 cut(s)	658
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	3 cut(s)	32, 713, 779
BfaI	CTAG	1 cut(s)	512
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	3 cut(s)	93, 189, 558
BmrFI	CCNGG	1 cut(s)	356
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	4 cut(s)	73, 270, 403, 670
BmuI	ACTGGG	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	759
BsaAI	YACGTR	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	139
BseAI	TCCGGA	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	7 cut(s)	88, 418, 502, 530, 661, 754, 788
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	5 cut(s)	59, 708, 717, 726, 750
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	2 cut(s)	33, 621
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	3 cut(s)	32, 713, 779
BsmFI	GGGAC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp13I	TCCGGA	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	91, 585
BspACI	CCGC	4 cut(s)	95, 192, 230, 575
BspCNI	CTCAG	5 cut(s)	58, 709, 718, 727, 751
BspEI	TCCGGA	1 cut(s)	533
BspLI	GGNNCC	3 cut(s)	93, 189, 558
BspPI	GGATC	3 cut(s)	86, 99, 580
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	91, 585
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	146, 259
BstDEI	CTNAG	7 cut(s)	45, 118, 681, 717, 726, 735, 759
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	7 cut(s)	88, 418, 502, 530, 661, 754, 788
BstKTI	GATC	2 cut(s)	94, 588
BstMAI	GTCTC	3 cut(s)	32, 713, 779
BstMBI	GATC	2 cut(s)	91, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 145, 254
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BtsCI	GGATG	7 cut(s)	88, 418, 502, 530, 661, 754, 788
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	146, 259
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	3 cut(s)	102, 377, 392
CviAII	CATG	2 cut(s)	593, 704
CviJI	RGCY	5 cut(s)	63, 214, 520, 541, 716
CviKI_1	RGCY	5 cut(s)	63, 214, 520, 541, 716
CviQI	GTAC	3 cut(s)	102, 377, 392
DdeI	CTNAG	7 cut(s)	45, 118, 681, 717, 726, 735, 759
DpnI	GATC	2 cut(s)	93, 587
DpnII	GATC	2 cut(s)	91, 585
DraIII	CACNNNGTG	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	2 cut(s)	401, 402
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	596, 707
FaiI	YATR	8 cut(s)	150, 372, 428, 475, 477, 523, 594, 705
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	592, 703
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	7 cut(s)	95, 425, 509, 517, 648, 761, 775
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	1 cut(s)	576
HapII	CCGG	1 cut(s)	534
HgaI	GACGC	1 cut(s)	782
Hin1II	CATG	2 cut(s)	596, 707
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	2 cut(s)	40, 160
HpaII	CCGG	1 cut(s)	534
Hpy166II	GTNNAC	2 cut(s)	23, 323
Hpy188I	TCNGA	6 cut(s)	48, 421, 727, 736, 760, 772
Hpy188III	TCNNGA	2 cut(s)	534, 698
Hpy8I	GTNNAC	2 cut(s)	23, 323
HpyAV	CCTTC	5 cut(s)	4, 376, 541, 668, 704
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	7 cut(s)	86, 144, 248, 338, 409, 466, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 145, 254
HpyF3I	CTNAG	7 cut(s)	45, 118, 681, 717, 726, 735, 759
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	2 cut(s)	596, 707
Kpn2I	TCCGGA	1 cut(s)	533
Kzo9I	GATC	2 cut(s)	91, 585
LweI	GCATC	4 cut(s)	73, 270, 403, 670
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	2 cut(s)	110, 397
MalI	GATC	2 cut(s)	93, 587
MboI	GATC	2 cut(s)	91, 585
MboII	GAAGA	3 cut(s)	281, 759, 791
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	1 cut(s)	644
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	263
MroI	TCCGGA	1 cut(s)	533
MseI	TTAA	2 cut(s)	170, 450
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	33, 145, 254
NdeII	GATC	2 cut(s)	91, 585
NlaIII	CATG	2 cut(s)	596, 707
NlaIV	GGNNCC	3 cut(s)	93, 189, 558
NmuCI	GTSAC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	577
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	3 cut(s)	93, 189, 558
PspPI	GGNCC	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	3 cut(s)	103, 378, 393
RsaNI	GTAC	3 cut(s)	102, 377, 392
SaqAI	TTAA	2 cut(s)	170, 450
SatI	GCNGC	1 cut(s)	576
Sau3AI	GATC	2 cut(s)	91, 585
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	4 cut(s)	73, 270, 403, 670
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	1 cut(s)	644
SsiI	CCGC	4 cut(s)	95, 192, 230, 575
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	397
TasI	AATT	1 cut(s)	644
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	2 cut(s)	170, 450
Tru9I	TTAA	2 cut(s)	170, 450
TscAI	CASTG	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	290, 687
TspGWI	ACGGA	2 cut(s)	701, 781
TspRI	CASTG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	353
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.