RLG00000003166

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018208
Physical Location & Seq
Reverse (-)
45123784 .. 45124422
639 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003166

Sequence Viewer

Length: 558 bp
ATGAGACTATTTGAGTCGTGTAGCAGTTGTGATTGGGTGGAGATTGAGCATGCGCTGGCCCACCCAAGGTGGTATGCCACAAATCACCTACTGCCAGATGGTAAGCTTATAATCGTTGGCCGACGCTTGCAACCAAACTTTGAATTTTTTCCCAAGGCCAAGGATAGAGAGGGGTCCATCACTGTGCCTTTCCTCGACGAAACAAAAGACGCCGTAGAGGACAATCTGTACCTCTTTGTTTTCATCAACGTTGATCGCAATTTATTCATATATGCCAACAATCGAGCAATTCTTCTGAACTACGTTATCGGAGAAACTGTTCAAAACAATACGGTTGCGGAGGCACAAGTCCTCATCTACGGCGAAGCTCCGCTAGGCTCCTATGACAAGGCTCTCAACAAGGGGATTTTCTTGGATGCTTTGAACACCTGCGCTCGCATGACCATAACCGATCCAAATCCTCGGTGGACTTTGGAGACCATGCCCAGCCCTCGAGTCATAGCCGACATGACTTTACTGTATGACAGAAATGTCCTCATAATCAATGGCGGATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

186

Amino Acids

21.05

Weight (kDa)

5.05

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 1 - 109 3.2e-37 Glyoxal oxidase N-terminus
Glyoxal_oxid_N PF07250 108 - 184 9.3e-20 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018208)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0196161
rosa_laevigata RLG00000003166 RLG00000004057
rosa_multiflora Rmu_sc0000821.1_g000022 Rmu_sc0033762.1_g000001
rosa_roxburghii Rroxscaffold_3G00249710 Rroxscaffold_3G00259710
rosa_rugosa Rorug07G0031400
rosa_samantha Rh7CG162600
rosa_wichuraiana Rw7G013430 Rw7G020650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
AarI CACCTGC 1 cut(s) 437
AasI GACNNNNNNGTC 1 cut(s) 530
Acc36I ACCTGC 1 cut(s) 437
AciI CCGC 3 cut(s) 338, 371, 549
AclI AACGTT 1 cut(s) 249
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 3 cut(s) 143, 323, 424
AloI GAACNNNNNNTCC 2 cut(s) 303, 335
AluBI AGCT 2 cut(s) 106, 368
AluI AGCT 2 cut(s) 106, 368
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 3 cut(s) 57, 118, 156
ApoI RAATTY 1 cut(s) 143
Asp700I GAANNNNTTC 2 cut(s) 147, 318
AspLEI GCGC 2 cut(s) 55, 434
AspS9I GGNCC 2 cut(s) 58, 174
AsuHPI GGTGA 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 1 cut(s) 174
BccI CCATC 2 cut(s) 92, 185
BceAI ACGGC 2 cut(s) 197, 376
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 437
Bme18I GGWCC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 2 cut(s) 58, 174
BmiI GGNNCC 2 cut(s) 175, 379
BmsI GCATC 1 cut(s) 406
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 4 cut(s) 65, 153, 159, 461
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 456
BseDI CCNNGG 4 cut(s) 65, 153, 159, 461
BseGI GGATG 1 cut(s) 421
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 485
BshFI GGCC 3 cut(s) 59, 120, 158
BsiHKCI CYCGRG 1 cut(s) 492
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 470
BsnI GGCC 3 cut(s) 59, 120, 158
Bso31I GGTCTC 1 cut(s) 470
BsoBI CYCGRG 1 cut(s) 492
Bsp143I GATC 2 cut(s) 253, 451
BspACI CCGC 3 cut(s) 338, 371, 549
BspANI GGCC 3 cut(s) 59, 120, 158
BspLI GGNNCC 2 cut(s) 175, 379
BspMI ACCTGC 1 cut(s) 437
BspPI GGATC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 470
BssECI CCNNGG 4 cut(s) 65, 153, 159, 461
BssMI GATC 2 cut(s) 253, 451
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 3 cut(s) 65, 153, 159
Bst4CI ACNGT 4 cut(s) 184, 319, 334, 519
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 4 cut(s) 51, 57, 128, 436
BstF5I GGATG 1 cut(s) 421
BstHHI GCGC 2 cut(s) 55, 434
BstKTI GATC 2 cut(s) 256, 454
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 2 cut(s) 253, 451
BstNSI RCATGY 1 cut(s) 53
BsuRI GGCC 3 cut(s) 59, 120, 158
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 437
Cac8I GCNNGC 4 cut(s) 51, 57, 128, 436
CfoI GCGC 2 cut(s) 55, 434
Cfr13I GGNCC 2 cut(s) 58, 174
CseI GACGC 2 cut(s) 132, 218
Csp6I GTAC 1 cut(s) 229
CviAII CATG 4 cut(s) 50, 439, 481, 508
CviJI RGCY 9 cut(s) 59, 106, 120, 158, 368, 378, 392, 489, 503
CviKI_1 RGCY 9 cut(s) 59, 106, 120, 158, 368, 378, 392, 489, 503
CviQI GTAC 1 cut(s) 229
DpnI GATC 2 cut(s) 255, 453
DpnII GATC 2 cut(s) 253, 451
DrdI GACNNNNNNGTC 1 cut(s) 530
DseDI GACNNNNNNGTC 1 cut(s) 530
EaeI YGGCCR 1 cut(s) 118
Eco130I CCWWGG 3 cut(s) 65, 153, 159
Eco31I GGTCTC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 492
EcoT14I CCWWGG 3 cut(s) 65, 153, 159
ErhI CCWWGG 3 cut(s) 65, 153, 159
FaeI CATG 4 cut(s) 53, 442, 484, 511
FatI CATG 4 cut(s) 49, 438, 480, 507
FokI GGATG 1 cut(s) 428
FspBI CTAG 1 cut(s) 374
GlaI GCGC 2 cut(s) 54, 433
GsaI CCCAGC 1 cut(s) 489
HaeIII GGCC 3 cut(s) 59, 120, 158
HgaI GACGC 2 cut(s) 132, 218
HhaI GCGC 2 cut(s) 55, 434
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 4 cut(s) 53, 442, 484, 511
Hin6I GCGC 2 cut(s) 53, 432
HinP1I GCGC 2 cut(s) 53, 432
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 2 cut(s) 14, 495
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 2 cut(s) 297, 311
Hpy8I GTNNAC 1 cut(s) 468
Hpy99I CGWCG 2 cut(s) 126, 200
HpyCH4III ACNGT 4 cut(s) 184, 319, 334, 519
HpyCH4IV ACGT 2 cut(s) 249, 303
HpyCH4V TGCA 1 cut(s) 130
HpySE526I ACGT 2 cut(s) 249, 303
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 4 cut(s) 53, 442, 484, 511
HspAI GCGC 2 cut(s) 53, 432
Kzo9I GATC 2 cut(s) 253, 451
LmnI GCTCC 2 cut(s) 373, 383
LpnPI CCDG 4 cut(s) 41, 108, 442, 499
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 374
MaeII ACGT 2 cut(s) 249, 303
MalI GATC 2 cut(s) 255, 453
MboI GATC 2 cut(s) 253, 451
MboII GAAGA 1 cut(s) 284
MluCI AATT 3 cut(s) 143, 259, 288
MlyI GAGTC 2 cut(s) 23, 504
MnlI CCTC 9 cut(s) 163, 203, 211, 242, 334, 362, 471, 501, 545
MroXI GAANNNNTTC 2 cut(s) 147, 318
MslI CAYNNNNRTG 1 cut(s) 182
NdeII GATC 2 cut(s) 253, 451
NlaIII CATG 4 cut(s) 53, 442, 484, 511
NlaIV GGNNCC 2 cut(s) 175, 379
NspI RCATGY 1 cut(s) 53
PaeI GCATGC 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 492
PaqCI CACCTGC 1 cut(s) 437
PdmI GAANNNNTTC 2 cut(s) 147, 318
PleI GAGTC 2 cut(s) 22, 503
PpsI GAGTC 2 cut(s) 22, 503
PsiI TTATAA 1 cut(s) 110
Psp1406I AACGTT 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 485
PspN4I GGNNCC 2 cut(s) 175, 379
PspPI GGNCC 2 cut(s) 58, 174
PspXI VCTCGAGB 1 cut(s) 492
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 182
Sau3AI GATC 2 cut(s) 253, 451
Sau96I GGNCC 2 cut(s) 58, 174
SchI GAGTC 2 cut(s) 23, 504
SetI ASST 8 cut(s) 71, 90, 108, 234, 252, 306, 370, 431
SfaNI GCATC 1 cut(s) 406
Sfr274I CTCGAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 174
SlaI CTCGAG 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 492
SmoI CTYRAG 1 cut(s) 492
SphI GCATGC 1 cut(s) 53
Sse9I AATT 3 cut(s) 143, 259, 288
SsiI CCGC 3 cut(s) 338, 371, 549
SspMI CTAG 1 cut(s) 374
StyI CCWWGG 3 cut(s) 65, 153, 159
TaaI ACNGT 4 cut(s) 184, 319, 334, 519
TaiI ACGT 2 cut(s) 252, 306
TaqI TCGA 3 cut(s) 195, 283, 493
TasI AATT 3 cut(s) 143, 259, 288
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 232, 256
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 462
XhoI CTCGAG 1 cut(s) 492
XmnI GAANNNNTTC 2 cut(s) 147, 318
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.