Rroxscaffold_3G00249710

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018208
Physical Location & Seq
Forward (+)
43496616 .. 43496954
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249710.1

Sequence Viewer

Length: 339 bp
ATGTCTTTCCTCGACAAAACAAAGGACGCCGTAGAGGACAATCTGTACCCTTTTGTTTTCCTCAACGTTGATGGCAATTTATTCATATATACCAACAATCAAGCAATTCTTCTGAACTACGTTATCGAAGAAACTGTGAAGACTTATCCCACAATATCGGGCGACGATCAGAGATCGTACCCCAACACCGGTTCCGCCGTCTTGCTCCTTTTGAAGGTTCAAAACAATACTGTGGCTGAGGGGCAAGTCCTCGTCTACGGCGGAGCTCCACTAGGCTCCTACGACAAGGCTCTCAACAAGGGGATTTTCTTGGACGCTTTGAACACCTGCGCCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

112

Amino Acids

12.24

Weight (kDa)

4.36

Isoelectric Point (pI)

24.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 2 - 111 3.7e-34 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018208)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0196161
rosa_laevigata RLG00000003166 RLG00000004057
rosa_multiflora Rmu_sc0000821.1_g000022 Rmu_sc0033762.1_g000001
rosa_roxburghii Rroxscaffold_3G00249710 Rroxscaffold_3G00259710
rosa_rugosa Rorug07G0031400
rosa_samantha Rh7CG162600
rosa_wichuraiana Rw7G013430 Rw7G020650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 255
AciI CCGC 3 cut(s) 195, 261, 333
AclI AACGTT 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 2 cut(s) 47, 179
AfiI CCNNNNNNNGG 2 cut(s) 188, 214
AgeI ACCGGT 1 cut(s) 188
AgsI TTSAA 3 cut(s) 214, 221, 322
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 268
AsiGI ACCGGT 1 cut(s) 188
AspLEI GCGC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 65
BceAI ACGGC 3 cut(s) 14, 182, 274
BfaI CTAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
BmiI GGNNCC 2 cut(s) 193, 277
BpiI GAAGAC 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 214
Bse118I RCCGGY 1 cut(s) 188
BseLI CCNNNNNNNGG 2 cut(s) 188, 214
BseMII CTCAG 1 cut(s) 228
BshTI ACCGGT 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 188, 214
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 2 cut(s) 166, 173
BspACI CCGC 3 cut(s) 195, 261, 333
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 193, 277
BspMI ACCTGC 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssMI GATC 2 cut(s) 166, 173
BssNI GRCGYC 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 136, 232
BstACI GRCGYC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 237
BstENI CCTNNNNNAGG 1 cut(s) 212
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 2 cut(s) 169, 176
BstMBI GATC 2 cut(s) 166, 173
BstV2I GAAGAC 1 cut(s) 146
BveI ACCTGC 1 cut(s) 335
CfoI GCGC 1 cut(s) 332
Cfr10I RCCGGY 1 cut(s) 188
CseI GACGC 2 cut(s) 35, 323
Csp6I GTAC 2 cut(s) 46, 178
CspAI ACCGGT 1 cut(s) 188
CviAII CATG 1 cut(s) 336
CviJI RGCY 4 cut(s) 236, 266, 276, 290
CviKI_1 RGCY 4 cut(s) 236, 266, 276, 290
CviQI GTAC 2 cut(s) 46, 178
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 168, 175
DpnII GATC 2 cut(s) 166, 173
EciI GGCGGA 2 cut(s) 184, 276
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 268
FaeI CATG 1 cut(s) 339
FaiI YATR 4 cut(s) 86, 88, 90, 337
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 1 cut(s) 335
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 333
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 331
GluI GCNGC 1 cut(s) 333
HapII CCGG 1 cut(s) 189
HgaI GACGC 2 cut(s) 35, 323
HhaI GCGC 1 cut(s) 332
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 1 cut(s) 339
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HpaII CCGG 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 114, 171
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 2 cut(s) 136, 232
HpyCH4IV ACGT 2 cut(s) 66, 120
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 2 cut(s) 66, 120
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 339
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 2 cut(s) 166, 173
LmnI GCTCC 4 cut(s) 210, 263, 271, 281
LpnPI CCDG 1 cut(s) 202
MaeI CTAG 1 cut(s) 272
MaeII ACGT 2 cut(s) 66, 120
MalI GATC 2 cut(s) 168, 175
MboI GATC 2 cut(s) 166, 173
MboII GAAGA 3 cut(s) 101, 140, 151
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 2 cut(s) 76, 105
MnlI CCTC 5 cut(s) 20, 28, 71, 232, 260
MspI CCGG 1 cut(s) 189
NdeII GATC 2 cut(s) 166, 173
NlaIII CATG 1 cut(s) 339
NlaIV GGNNCC 2 cut(s) 193, 277
PaqCI CACCTGC 1 cut(s) 335
PinAI ACCGGT 1 cut(s) 188
PkrI GCNGC 1 cut(s) 334
Psp124BI GAGCTC 1 cut(s) 268
Psp1406I AACGTT 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 193, 277
RsaI GTAC 2 cut(s) 47, 179
RsaNI GTAC 2 cut(s) 46, 178
SacI GAGCTC 1 cut(s) 268
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 2 cut(s) 166, 173
SduI GDGCHC 1 cut(s) 268
SetI ASST 5 cut(s) 69, 123, 219, 268, 329
Sse9I AATT 2 cut(s) 76, 105
SsiI CCGC 3 cut(s) 195, 261, 333
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 1 cut(s) 268
TaaI ACNGT 2 cut(s) 136, 232
TaiI ACGT 2 cut(s) 69, 123
TaqI TCGA 2 cut(s) 12, 126
TasI AATT 2 cut(s) 76, 105
TauI GCSGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 73
XagI CCTNNNNNAGG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.