Rw7G020650

Galactose oxidase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
23636288 .. 23637728
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G020650.1

Sequence Viewer

Length: 1281 bp
ATGACAACTAAATACTTTCTGCTGTCGTTCTCCCTCTTGATCACCGCAGCTGCTGCTACTTCCGGCGGCGGCGGCCGGTGGCAGGTCTTGCAGAAAAGTATTGGGATTTCAGCCATGCACATGCAGCTGCTGCGCAACGACCGAGTCATCATGTTCGACCGAACGGATTTCGGAAAATCAAATTTGTCGCTGCCGAGGGGAATCTGCCGGAGGAACCCAAACGACACCGCGTTGAAGGTCGACTGTACCGCACATTCGGTCGAGTACGACGTGGCAAGCAACTCTTTCCGACCGCTCATGCTGTTTTCCGACACTTGGTGCTCCTCCGGGTCCGTCAGCCCCAACGGCAGTCTCGTTCAGACTGGGGGGTGGAACGACGGTGAGCTAAGGGTGAGACTGTTTGAGCCATGCAGCAGTTGTGATTGGGAGGAGATTGCGCATGCGCTGGCCCACCCAAGGTGGTATTCCACAAATCACCTGCTGCCAGATAGCAGGCTTATAATCGTTGGCGGACGCTCGCAGCCAAACTATGAATTTTTTCCCAAGACCAAGGACGGGGAGGGGTCCATCACTGTGCCTTTCCTTGACGAAACAAAGGACGCCGTAGAGGACAATCTGTACCCTTTTGTTTTTCTCAACGTTGATGGCAATTTATTCATATATGCCAACAATCGAGCAATTCTTCTGAACTACGTTACCGGAGAAACTGTGAAGACTTATCCCACAATATCGGGCGGCGATCCGAGATCGTACCCCAGCACCGGTTCCGCCATCATGAATCCGACGTCCATCCCTGGCATGTACCACTCGACCGCCGTTCTGTTACGTGACGGTCGCGTGTTGGTCGGTGGGAGCAATCCACACGAGGGATACGTGTTTTCCTCCGTGCTCTTCCCAACCGAACTTTCCTTGGAAGCATTTTATCCGGAATATCTCAATCCTGAATTCTCCGATGTTCGTCCCACAGTGAGTGCACCCAAATCTCAACAAGTTGTTGGCTACGGGAAAAAGGTACAGATTCAATTTTCTATATCCGGGAAACTTGCCGCTCAATCCTTGTTCGCATCGATGATTTCTCCATCATTTTCAACCCACTCGTTCTCCATGAGCCAACGGTCATTACTTCTCTCTATTGACAATGTCGTATCAGCGGGTAATCGGACATATCAAGGGCAGCTCACCATGCCAAGTGATCCTAACCTGGCCCCCTCTTCGTATTTTATGCTCTATGTTGTTCATCAAAACATACCAAGTGAGGCCACTTGGATCCGCATTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

46.93

Weight (kDa)

6.31

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 39 - 261 3.8e-100 Glyoxal oxidase N-terminus
Glyoxal_oxid_N PF07250 258 - 311 2e-20 Glyoxal oxidase N-terminus
GO-like_E_set PF09118 320 - 425 3.7e-25 Galactose oxidase-like, Early set domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018208)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
AarI CACCTGC 1 cut(s) 486
AatII GACGTC 1 cut(s) 788
Acc16I TGCGCA 2 cut(s) 134, 438
Acc36I ACCTGC 2 cut(s) 73, 486
AccBSI CCGCTC 2 cut(s) 295, 1049
AccI GTMKAC 1 cut(s) 240
AccII CGCG 2 cut(s) 230, 837
AccIII TCCGGA 1 cut(s) 925
AclI AACGTT 1 cut(s) 639
AclWI GGATC 4 cut(s) 734, 1187, 1261, 1274
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 3 cut(s) 181, 533, 944
AcyI GRCGYC 2 cut(s) 600, 785
AdeI CACNNNGTG 1 cut(s) 318
AfaI GTAC 6 cut(s) 247, 266, 620, 752, 803, 1014
AfiI CCNNNNNNNGG 6 cut(s) 82, 315, 456, 555, 761, 866
AflIII ACRYGT 1 cut(s) 873
AgeI ACCGGT 1 cut(s) 761
AgsI TTSAA 3 cut(s) 235, 1022, 1089
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 793, 1200
AjuI GAANNNNNNNTTGG 4 cut(s) 448, 480, 889, 921
AluBI AGCT 4 cut(s) 50, 127, 385, 1177
AluI AGCT 4 cut(s) 50, 127, 385, 1177
Alw21I GWGCWC 3 cut(s) 323, 891, 976
Alw26I GTCTC 2 cut(s) 356, 388
Alw44I GTGCAC 1 cut(s) 972
AlwI GGATC 4 cut(s) 734, 1187, 1261, 1274
AlwNI CAGNNNCTG 2 cut(s) 53, 130
Aor13HI TCCGGA 1 cut(s) 925
AoxI GGCC 4 cut(s) 73, 447, 1203, 1257
ApaLI GTGCAC 1 cut(s) 972
ApoI RAATTY 3 cut(s) 181, 533, 944
AsiGI ACCGGT 1 cut(s) 761
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 3 cut(s) 135, 439, 445
AspS9I GGNCC 4 cut(s) 330, 448, 564, 1204
AsuC2I CCSGG 2 cut(s) 328, 1036
AsuHPI GGTGA 5 cut(s) 34, 392, 403, 467, 1171
AvaII GGWCC 2 cut(s) 330, 564
BaeGI GKGCMC 1 cut(s) 976
BamHI GGATCC 1 cut(s) 1266
BauI CACGAG 1 cut(s) 863
BbsI GAAGAC 1 cut(s) 719
Bbv12I GWGCWC 3 cut(s) 323, 891, 976
BccI CCATC 5 cut(s) 575, 638, 779, 797, 1087
BceAI ACGGC 3 cut(s) 361, 587, 800
BciT130I CCWGG 2 cut(s) 795, 1202
BciVI GTATCC 1 cut(s) 863
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 2 cut(s) 328, 1036
BcoDI GTCTC 2 cut(s) 356, 388
BfuAI ACCTGC 2 cut(s) 73, 486
BfuI GTATCC 1 cut(s) 863
BglI GCCNNNNNGGC 1 cut(s) 345
Bme1390I CCNGG 4 cut(s) 328, 795, 1036, 1202
Bme18I GGWCC 2 cut(s) 330, 564
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 4 cut(s) 330, 448, 564, 1204
BmiI GGNNCC 6 cut(s) 215, 331, 565, 766, 1206, 1268
BmrFI CCNGG 4 cut(s) 328, 795, 1036, 1202
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 1 cut(s) 1073
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 719
Bpu10I CCTNAGC 1 cut(s) 386
BpuMI CCSGG 2 cut(s) 328, 1036
Bsa29I ATCGAT 1 cut(s) 1067
BsaAI YACGTR 2 cut(s) 827, 874
BsaHI GRCGYC 2 cut(s) 600, 785
BsaJI CCNNGG 5 cut(s) 194, 455, 549, 793, 909
BsaWI WCCGGW 3 cut(s) 698, 761, 925
BsaXI ACNNNNNCTCC 4 cut(s) 693, 723, 1085, 1115
Bsc4I CCNNNNNNNGG 6 cut(s) 82, 315, 456, 555, 761, 866
Bse118I RCCGGY 2 cut(s) 75, 761
Bse1I ACTGG 1 cut(s) 367
Bse3DI GCAATG 1 cut(s) 1272
BseAI TCCGGA 1 cut(s) 925
BseBI CCWGG 2 cut(s) 795, 1202
BseCI ATCGAT 1 cut(s) 1067
BseDI CCNNGG 5 cut(s) 194, 455, 549, 793, 909
BseGI GGATG 1 cut(s) 789
BseLI CCNNNNNNNGG 6 cut(s) 82, 315, 456, 555, 761, 866
BseMI GCAATG 1 cut(s) 1272
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 2 cut(s) 313, 443
BseSI GKGCMC 1 cut(s) 976
BseX3I CGGCCG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 755
Bsh1236I CGCG 2 cut(s) 230, 837
Bsh1285I CGRYCG 7 cut(s) 76, 142, 160, 261, 293, 813, 835
BshFI GGCC 4 cut(s) 75, 449, 1205, 1259
BshTI ACCGGT 1 cut(s) 761
BshVI ATCGAT 1 cut(s) 1067
BsiEI CGRYCG 7 cut(s) 76, 142, 160, 261, 293, 813, 835
BsiHKAI GWGCWC 3 cut(s) 323, 891, 976
BsiSI CCGG 8 cut(s) 63, 76, 208, 327, 699, 762, 926, 1035
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 6 cut(s) 82, 315, 456, 555, 761, 866
BsmAI GTCTC 2 cut(s) 356, 388
BsmFI GGGAC 1 cut(s) 945
BsnI GGCC 4 cut(s) 75, 449, 1205, 1259
Bsp1286I GDGCHC 3 cut(s) 323, 891, 976
Bsp13I TCCGGA 1 cut(s) 925
Bsp143I GATC 5 cut(s) 39, 739, 746, 1192, 1266
BspANI GGCC 4 cut(s) 75, 449, 1205, 1259
BspDI ATCGAT 1 cut(s) 1067
BspEI TCCGGA 1 cut(s) 925
BspFNI CGCG 2 cut(s) 230, 837
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 6 cut(s) 215, 331, 565, 766, 1206, 1268
BspMI ACCTGC 2 cut(s) 73, 486
BspPI GGATC 4 cut(s) 734, 1187, 1261, 1274
BspQI GCTCTTC 1 cut(s) 896
BsrBI CCGCTC 2 cut(s) 295, 1049
BsrDI GCAATG 1 cut(s) 1272
BsrFI RCCGGY 2 cut(s) 75, 761
BsrI ACTGG 1 cut(s) 367
BssAI RCCGGY 2 cut(s) 75, 761
BssECI CCNNGG 5 cut(s) 194, 455, 549, 793, 909
BssMI GATC 5 cut(s) 39, 739, 746, 1192, 1266
BssNI GRCGYC 2 cut(s) 600, 785
BssSI CACGAG 1 cut(s) 863
BssT1I CCWWGG 3 cut(s) 455, 549, 909
Bst2BI CACGAG 1 cut(s) 863
Bst2UI CCWGG 2 cut(s) 795, 1202
Bst4CI ACNGT 8 cut(s) 245, 380, 399, 574, 709, 833, 967, 1116
Bst6I CTCTTC 2 cut(s) 896, 1216
BstACI GRCGYC 2 cut(s) 600, 785
BstAPI GCANNNNNTGC 3 cut(s) 53, 88, 130
BstBAI YACGTR 2 cut(s) 827, 874
BstC8I GCNNGC 5 cut(s) 277, 441, 447, 494, 518
BstDEI CTNAG 1 cut(s) 386
BstF5I GGATG 1 cut(s) 789
BstFNI CGCG 2 cut(s) 230, 837
BstHHI GCGC 3 cut(s) 135, 439, 445
BstKTI GATC 5 cut(s) 42, 742, 749, 1195, 1269
BstMAI GTCTC 2 cut(s) 356, 388
BstMBI GATC 5 cut(s) 39, 739, 746, 1192, 1266
BstMCI CGRYCG 7 cut(s) 76, 142, 160, 261, 293, 813, 835
BstMWI GCNNNNNNNGC 7 cut(s) 53, 72, 88, 124, 130, 345, 1183
BstNI CCWGG 2 cut(s) 795, 1202
BstNSI RCATGY 3 cut(s) 124, 443, 802
BstSCI CCNGG 4 cut(s) 326, 793, 1034, 1200
BstSLI GKGCMC 1 cut(s) 976
BstUI CGCG 2 cut(s) 230, 837
BstV2I GAAGAC 1 cut(s) 719
BstX2I RGATCY 1 cut(s) 1266
BstYI RGATCY 1 cut(s) 1266
BstZI CGGCCG 1 cut(s) 73
Bsu15I ATCGAT 1 cut(s) 1067
BsuI GTATCC 1 cut(s) 863
BsuRI GGCC 4 cut(s) 75, 449, 1205, 1259
BsuTUI ATCGAT 1 cut(s) 1067
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 789
BtsIMutI CAGTG 2 cut(s) 570, 972
BveI ACCTGC 2 cut(s) 73, 486
Cac8I GCNNGC 5 cut(s) 277, 441, 447, 494, 518
CaiI CAGNNNCTG 2 cut(s) 53, 130
CciI TCATGA 1 cut(s) 774
CfoI GCGC 3 cut(s) 135, 439, 445
Cfr10I RCCGGY 2 cut(s) 75, 761
Cfr13I GGNCC 4 cut(s) 330, 448, 564, 1204
ClaI ATCGAT 1 cut(s) 1067
CseI GACGC 2 cut(s) 522, 608
Csp6I GTAC 6 cut(s) 246, 265, 619, 751, 802, 1013
CspAI ACCGGT 1 cut(s) 761
CviQI GTAC 6 cut(s) 246, 265, 619, 751, 802, 1013
DdeI CTNAG 1 cut(s) 386
DpnI GATC 5 cut(s) 41, 741, 748, 1194, 1268
DpnII GATC 5 cut(s) 39, 739, 746, 1192, 1266
DraIII CACNNNGTG 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 896, 1216
EarI CTCTTC 2 cut(s) 896, 1216
EciI GGCGGA 2 cut(s) 525, 757
EclXI CGGCCG 1 cut(s) 73
Eco130I CCWWGG 3 cut(s) 455, 549, 909
Eco47I GGWCC 2 cut(s) 330, 564
Eco52I CGGCCG 1 cut(s) 73
EcoRI GAATTC 1 cut(s) 944
EcoRII CCWGG 2 cut(s) 793, 1200
EcoT14I CCWWGG 3 cut(s) 455, 549, 909
ErhI CCWWGG 3 cut(s) 455, 549, 909
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 1 cut(s) 945
FauI CCCGC 1 cut(s) 1144
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 1 cut(s) 240
FokI GGATG 1 cut(s) 776
FspI TGCGCA 2 cut(s) 134, 438
GlaI GCGC 3 cut(s) 134, 438, 444
GsaI CCCAGC 1 cut(s) 759
HaeIII GGCC 4 cut(s) 75, 449, 1205, 1259
HapII CCGG 8 cut(s) 63, 76, 208, 327, 699, 762, 926, 1035
HgaI GACGC 2 cut(s) 522, 608
HhaI GCGC 3 cut(s) 135, 439, 445
Hin1I GRCGYC 2 cut(s) 600, 785
Hin6I GCGC 3 cut(s) 133, 437, 443
HinP1I GCGC 3 cut(s) 133, 437, 443
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 4 cut(s) 144, 201, 778, 1018
HpaII CCGG 8 cut(s) 63, 76, 208, 327, 699, 762, 926, 1035
HphI GGTGA 5 cut(s) 34, 392, 403, 467, 1171
Hpy166II GTNNAC 2 cut(s) 241, 974
Hpy188I TCNGA 9 cut(s) 173, 290, 310, 360, 687, 744, 783, 952, 1161
Hpy188III TCNNGA 4 cut(s) 37, 775, 926, 941
Hpy8I GTNNAC 2 cut(s) 241, 974
Hpy99I CGWCG 3 cut(s) 272, 380, 787
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 8 cut(s) 245, 380, 399, 574, 709, 833, 967, 1116
HpyCH4IV ACGT 6 cut(s) 270, 639, 693, 785, 826, 873
HpyCH4V TGCA 5 cut(s) 91, 118, 124, 411, 974
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 72, 88, 124, 130, 345, 1183
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 6 cut(s) 270, 639, 693, 785, 826, 873
Hsp92I GRCGYC 2 cut(s) 600, 785
HspAI GCGC 3 cut(s) 133, 437, 443
Kpn2I TCCGGA 1 cut(s) 925
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 5 cut(s) 39, 739, 746, 1192, 1266
LguI GCTCTTC 1 cut(s) 896
LmnI GCTCC 2 cut(s) 326, 852
LweI GCATC 1 cut(s) 1073
MaeII ACGT 6 cut(s) 270, 639, 693, 785, 826, 873
MaeIII GTNAC 3 cut(s) 694, 822, 827
MalI GATC 5 cut(s) 41, 741, 748, 1194, 1268
MbiI CCGCTC 2 cut(s) 295, 1049
MboI GATC 5 cut(s) 39, 739, 746, 1192, 1266
MboII GAAGA 4 cut(s) 674, 724, 883, 1203
MflI RGATCY 1 cut(s) 1266
MhlI GDGCHC 3 cut(s) 323, 891, 976
MluCI AATT 6 cut(s) 181, 533, 649, 678, 944, 1022
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 3 cut(s) 313, 333, 806
MroI TCCGGA 1 cut(s) 925
MroXI GAANNNNTTC 1 cut(s) 537
MslI CAYNNNNRTG 2 cut(s) 119, 572
MspA1I CMGCKG 3 cut(s) 50, 127, 1151
MspI CCGG 8 cut(s) 63, 76, 208, 327, 699, 762, 926, 1035
MspR9I CCNGG 4 cut(s) 328, 795, 1036, 1202
MvaI CCWGG 2 cut(s) 795, 1202
MvnI CGCG 2 cut(s) 230, 837
MwoI GCNNNNNNNGC 7 cut(s) 53, 72, 88, 124, 130, 345, 1183
NciI CCSGG 2 cut(s) 328, 1036
NdeII GATC 5 cut(s) 39, 739, 746, 1192, 1266
NlaIV GGNNCC 6 cut(s) 215, 331, 565, 766, 1206, 1268
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 827
NsbI TGCGCA 2 cut(s) 134, 438
NspI RCATGY 3 cut(s) 124, 443, 802
PaeI GCATGC 1 cut(s) 443
PagI TCATGA 1 cut(s) 774
PaqCI CACCTGC 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 896
PcsI WCGNNNNNNNCGW 3 cut(s) 267, 351, 870
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 3 cut(s) 201, 778, 1018
PflFI GACNNNGTC 2 cut(s) 143, 1139
PfoI TCCNGGA 1 cut(s) 1034
PinAI ACCGGT 1 cut(s) 761
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 2 cut(s) 827, 874
PsiI TTATAA 1 cut(s) 500
Psp1406I AACGTT 1 cut(s) 639
Psp6I CCWGG 2 cut(s) 793, 1200
PspFI CCCAGC 1 cut(s) 755
PspGI CCWGG 2 cut(s) 793, 1200
PspN4I GGNNCC 6 cut(s) 215, 331, 565, 766, 1206, 1268
PspPI GGNCC 4 cut(s) 330, 448, 564, 1204
PstNI CAGNNNCTG 2 cut(s) 53, 130
PsuI RGATCY 1 cut(s) 1266
PsyI GACNNNGTC 2 cut(s) 143, 1139
PvuII CAGCTG 2 cut(s) 50, 127
RsaI GTAC 6 cut(s) 247, 266, 620, 752, 803, 1014
RsaNI GTAC 6 cut(s) 246, 265, 619, 751, 802, 1013
RseI CAYNNNNRTG 2 cut(s) 119, 572
SalI GTCGAC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 896
Sau3AI GATC 5 cut(s) 39, 739, 746, 1192, 1266
Sau96I GGNCC 4 cut(s) 330, 448, 564, 1204
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 4 cut(s) 328, 795, 1036, 1202
SduI GDGCHC 3 cut(s) 323, 891, 976
SfaNI GCATC 1 cut(s) 1073
SinI GGWCC 2 cut(s) 330, 564
SmiMI CAYNNNNRTG 2 cut(s) 119, 572
SphI GCATGC 1 cut(s) 443
Sse9I AATT 6 cut(s) 181, 533, 649, 678, 944, 1022
StyD4I CCNGG 4 cut(s) 326, 793, 1034, 1200
StyI CCWWGG 3 cut(s) 455, 549, 909
TaaI ACNGT 8 cut(s) 245, 380, 399, 574, 709, 833, 967, 1116
TaiI ACGT 6 cut(s) 273, 642, 696, 788, 829, 876
TaqI TCGA 6 cut(s) 156, 240, 261, 673, 809, 1067
TaqII GACCGA 3 cut(s) 156, 174, 247
TasI AATT 6 cut(s) 181, 533, 649, 678, 944, 1022
TauI GCSGC 5 cut(s) 69, 72, 75, 738, 1049
TfiI GAWTC 3 cut(s) 201, 778, 1018
TscAI CASTG 2 cut(s) 577, 972
TseFI GTSAC 1 cut(s) 827
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 4 cut(s) 546, 646, 791, 1226
TspGWI ACGGA 3 cut(s) 179, 322, 874
TspRI CASTG 2 cut(s) 577, 972
Tth111I GACNNNGTC 2 cut(s) 143, 1139
VneI GTGCAC 1 cut(s) 972
VpaK11BI GGWCC 2 cut(s) 330, 564
XapI RAATTY 3 cut(s) 181, 533, 944
XceI RCATGY 3 cut(s) 124, 443, 802
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 537
ZraI GACGTC 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.