Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0021505

Physical Location & Seq

Genomic Coordinates Forward (+)

47802013 .. 47805209

Gene Structure 3197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGACGAGCAACTGAGCAGAAGTGAGCGATGGAGAACCTTCACGGCAACAGCACTTGCTGAAAGGAGGAAGCTTCGAGAATGCGGACCTCGACTCGCCGCTCCTCAATTCCCCCTGCGAGGCTCTCACTCGCCGGTCGACGGCTTCAAGCAGCGGCGCCACCCGCTATCGCCGGTGGATAATCTGATGGCGGCGGTGCCGAGGGAGGAGGCTCAGGTGATGGACGGCGTTTTGTTCACCGGAGGAAAAGAGGAGTTCGAGGCCTTCATCTACTTCTTCGGGGAAGAGTCTCTACAAAGGCCAAGTCCTGATCTCTCTTTCTCTCTCACTGGTTCATCAATTCTAAATTTTGTTTCTGTTGGACCTCTAATTTCAAATTATTTTGGTAGTGTTGTTAAATTCTTTGCTTGGCTTCAGAAGCTTTTACTTGGGAAATGCTGTGAAAACTCTAAAGCTTACCGAACATTTGTACATGGAAAAGAAAATTTGCATCCAACTCGTTTTCCTGGCAAGAACAAATCTGAGAATTGTGCTGGGTTACGTCAGTTCTTGGACTCGTTTTCTGGAACAGAACATACCACTGTGGGCGGTAGTTCTGTATCTTCTGGTCTTTTTCATGATTCAGCAGTTGGGTCAGTGACCAATGAGAAGGACACCAAGTCACGGGCAGATGTGAAGCTCAGTCATCTGGTCTCTGGCAATGAATTGACTTCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0007623 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016559 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N WD40

Protein Analysis

240

Amino Acids

26.42

Weight (kDa)

8.68

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021505)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003380
rosa_samantha	Rh7AG221800 Rh7AG222100 Rh7BG217600 Rh7DG228600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	156, 196
AccBSI	CCGCTC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	7 cut(s)	84, 99, 154, 164, 191, 194, 588
AcsI	RAATTY	3 cut(s)	346, 398, 484
AcuI	CTGAAG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	157
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	3 cut(s)	119, 140, 663
AgsI	TTSAA	2 cut(s)	148, 375
AhdI	GACNNNNNGTC	1 cut(s)	658
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	4 cut(s)	73, 421, 455, 679
AluI	AGCT	4 cut(s)	73, 421, 455, 679
Alw26I	GTCTC	2 cut(s)	294, 697
AoxI	GGCC	2 cut(s)	261, 299
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	3 cut(s)	346, 398, 484
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	86, 362
AsuHPI	GGTGA	2 cut(s)	229, 229
AvaII	GGWCC	2 cut(s)	86, 362
BanI	GGYRCC	2 cut(s)	156, 196
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	3 cut(s)	24, 181, 214
BceAI	ACGGC	3 cut(s)	60, 157, 241
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	294, 697
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	4 cut(s)	99, 152, 155, 192
BlsI	GCNGC	4 cut(s)	100, 153, 156, 193
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	2 cut(s)	86, 362
BmeRI	GACNNNNNGTC	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	86, 362
BmiI	GGNNCC	2 cut(s)	158, 198
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	697
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 140, 663
Bse118I	RCCGGY	2 cut(s)	133, 172
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	3 cut(s)	119, 140, 663
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	4 cut(s)	5, 227, 513, 694
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	3 cut(s)	93, 221, 266
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	533
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	263, 301
BshNI	GGYRCC	2 cut(s)	156, 196
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	134, 173, 240
BslI	CCNNNNNNNGG	3 cut(s)	119, 140, 663
BsmAI	GTCTC	2 cut(s)	294, 697
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	263, 301
Bso31I	GGTCTC	1 cut(s)	697
Bsp1407I	TGTACA	1 cut(s)	469
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	7 cut(s)	84, 99, 154, 164, 191, 194, 588
BspANI	GGCC	2 cut(s)	263, 301
BspCNI	CTCAG	4 cut(s)	6, 226, 514, 693
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	2 cut(s)	158, 198
BspT107I	GGYRCC	2 cut(s)	156, 196
BspTNI	GGTCTC	1 cut(s)	697
BsrBI	CCGCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	706
BsrFI	RCCGGY	2 cut(s)	133, 172
BsrGI	TGTACA	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	334
BssAI	RCCGGY	2 cut(s)	133, 172
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	157
BstAUI	TGTACA	1 cut(s)	469
BstDEI	CTNAG	4 cut(s)	14, 213, 522, 680
BstF5I	GGATG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	294, 697
BstMBI	GATC	1 cut(s)	310
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 418
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	263, 301
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	3 cut(s)	327, 579, 642
CciI	TCATGA	1 cut(s)	616
CfoI	GCGC	1 cut(s)	159
Cfr10I	RCCGGY	2 cut(s)	133, 172
Cfr13I	GGNCC	2 cut(s)	86, 362
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	2 cut(s)	473, 617
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	4 cut(s)	14, 213, 522, 680
DinI	GGCGCC	1 cut(s)	158
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
DriI	GACNNNNNGTC	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	279
Eam1105I	GACNNNNNGTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	697
Eco47I	GGWCC	2 cut(s)	86, 362
Eco57I	CTGAAG	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	505
EgeI	GGCGCC	1 cut(s)	158
EheI	GGCGCC	1 cut(s)	158
FaeI	CATG	2 cut(s)	476, 620
FaiI	YATR	3 cut(s)	474, 576, 618
FatI	CATG	2 cut(s)	472, 616
FauI	CCCGC	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	99, 152, 155, 192
FokI	GGATG	1 cut(s)	477
Fsp4HI	GCNGC	4 cut(s)	99, 152, 155, 192
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	4 cut(s)	99, 152, 155, 192
GsaI	CCCAGC	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	263, 301
HapII	CCGG	3 cut(s)	134, 173, 240
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	2 cut(s)	476, 620
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	3 cut(s)	71, 419, 453
HinfI	GANTC	4 cut(s)	93, 287, 554, 620
HpaII	CCGG	3 cut(s)	134, 173, 240
HphI	GGTGA	2 cut(s)	229, 229
Hpy166II	GTNNAC	2 cut(s)	139, 237
Hpy188I	TCNGA	3 cut(s)	186, 417, 523
Hpy188III	TCNNGA	4 cut(s)	77, 308, 564, 617
Hpy8I	GTNNAC	2 cut(s)	139, 237
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	49, 274, 643
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 418
HpyF3I	CTNAG	4 cut(s)	14, 213, 522, 680
HpySE526I	ACGT	1 cut(s)	541
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	476, 620
HspAI	GCGC	1 cut(s)	157
KasI	GGCGCC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	499
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	3 cut(s)	537, 637, 660
MalI	GATC	1 cut(s)	312
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	1 cut(s)	310
MboII	GAAGA	3 cut(s)	268, 296, 594
MluCI	AATT	9 cut(s)	107, 339, 346, 369, 376, 398, 484, 526, 704
Mly113I	GGCGCC	1 cut(s)	157
MlyI	GAGTC	3 cut(s)	87, 296, 548
MmeI	TCCRAC	2 cut(s)	340, 518
MseI	TTAA	2 cut(s)	396, 718
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	3 cut(s)	134, 173, 240
MspR9I	CCNGG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	163, 418
NarI	GGCGCC	1 cut(s)	157
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	476, 620
NlaIV	GGNNCC	2 cut(s)	158, 198
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	637, 660
PagI	TCATGA	1 cut(s)	616
PceI	AGGCCT	1 cut(s)	263
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	620
PkrI	GCNGC	4 cut(s)	100, 153, 156, 193
PleI	GAGTC	3 cut(s)	87, 295, 548
PluTI	GGCGCC	1 cut(s)	160
PpsI	GAGTC	3 cut(s)	87, 295, 548
Psp6I	CCWGG	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	158, 198
PspPI	GGNCC	2 cut(s)	86, 362
PsrI	GAACNNNNNNTAC	2 cut(s)	559, 591
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	396, 718
SatI	GCNGC	4 cut(s)	99, 152, 155, 192
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	2 cut(s)	86, 362
SchI	GAGTC	3 cut(s)	87, 296, 548
ScrFI	CCNGG	1 cut(s)	507
SetI	ASST	9 cut(s)	41, 75, 91, 219, 367, 423, 457, 544, 681
SfaNI	GCATC	1 cut(s)	499
SfoI	GGCGCC	1 cut(s)	158
SgrAI	CRCCGGYG	1 cut(s)	172
SinI	GGWCC	2 cut(s)	86, 362
Sse9I	AATT	9 cut(s)	107, 339, 346, 369, 376, 398, 484, 526, 704
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	7 cut(s)	84, 99, 154, 164, 191, 194, 588
SspDI	GGCGCC	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	505
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	4 cut(s)	76, 91, 138, 258
TasI	AATT	9 cut(s)	107, 339, 346, 369, 376, 398, 484, 526, 704
TatI	WGTACW	1 cut(s)	469
TauI	GCSGC	3 cut(s)	101, 157, 194
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	2 cut(s)	396, 718
Tru9I	TTAA	2 cut(s)	396, 718
TscAI	CASTG	3 cut(s)	334, 586, 642
TseFI	GTSAC	2 cut(s)	637, 660
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	637, 660
TspDTI	ATGAA	4 cut(s)	256, 324, 605, 717
TspRI	CASTG	3 cut(s)	334, 586, 642
VpaK11BI	GGWCC	2 cut(s)	86, 362
XapI	RAATTY	3 cut(s)	346, 398, 484
XmiI	GTMKAC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.