Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0021505

Physical Location & Seq

Genomic Coordinates Reverse (-)

18595609 .. 18600808

Gene Structure 5200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG217600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTAGACAGGGCTCTCCTAGGCTTTCCTAGGCATTCTGTGTTGAGAGTGAGCGATGGAGAACCTTCACGGCAACAGCACTTGCTGAAAGGAGGAAGCTTCGAGAATGCGGACCTCGACTCGCCGATCCTCAGGTCCCTGCGAGGCTCTCACTCGCCGGTCGACGGCTTCAAGCAGCGGCGCCACCCGCTATCGCCGGTGGATAATCTGATGGCGGCGGTGCCGAGGGAGGAGGCCCCGGTGATGGACGGCGTTTTGTTCACCGGAGGAAAAGAGGAGTTCGAGGCCTTCATCTACTTCTTCGGGGAAGAGTCTCTACGAAGTTTGTACATGGAAAAGAAAATTTGCATCCAACTCGTTTTCCTGGCAAGAACAAATCTGAGTTCTGTATCTTCTGGTCTTTTTCAAGATTCAGCAGTTGGGTCAGTGACCAATGAGAAGGACACCAAGTCACGGGCAGATGTGAAGCTCAGTCATCTGGCCTCTGGCAATGAATTGACTTCTATTAAAATACAGAAACAAGGCTGGCTGAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0007623 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016559 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N WD40

Protein Analysis

179

Amino Acids

19.82

Weight (kDa)

6.97

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021505)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003380
rosa_samantha	Rh7AG221800 Rh7AG222100 Rh7BG217600 Rh7DG228600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	180, 220
AccI	GTMKAC	2 cut(s)	6, 162
AciI	CCGC	5 cut(s)	110, 178, 188, 215, 218
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	164, 244, 453
AgsI	TTSAA	2 cut(s)	172, 407
AhdI	GACNNNNNGTC	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	2 cut(s)	99, 469
AluI	AGCT	2 cut(s)	99, 469
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	3 cut(s)	234, 285, 480
ApeKI	GCWGC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	342
AspA2I	CCTAGG	2 cut(s)	19, 29
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	3 cut(s)	112, 135, 235
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	253, 253
AvaII	GGWCC	2 cut(s)	112, 135
AvrII	CCTAGG	2 cut(s)	19, 29
AxyI	CCTNAGG	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	180, 220
BanII	GRGCYC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	300, 332
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	3 cut(s)	50, 205, 238
BceAI	ACGGC	3 cut(s)	86, 181, 265
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	3 cut(s)	20, 30, 538
BfoI	RGCGCY	1 cut(s)	184
BisI	GCNGC	3 cut(s)	176, 179, 216
BlnI	CCTAGG	2 cut(s)	19, 29
BlsI	GCNGC	3 cut(s)	177, 180, 217
Bme1390I	CCNGG	2 cut(s)	239, 365
Bme18I	GGWCC	2 cut(s)	112, 135
BmeRI	GACNNNNNGTC	1 cut(s)	448
BmgT120I	GGNCC	3 cut(s)	112, 135, 235
BmiI	GGNNCC	4 cut(s)	137, 182, 222, 237
BmrFI	CCNGG	2 cut(s)	239, 365
BmsI	GCATC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	4 cut(s)	19, 29, 224, 237
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 244, 453
Bse118I	RCCGGY	2 cut(s)	157, 196
Bse21I	CCTNAGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	4 cut(s)	19, 29, 224, 237
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	3 cut(s)	164, 244, 453
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	3 cut(s)	145, 371, 484
BseRI	GAGGAG	2 cut(s)	245, 290
BseXI	GCAGC	1 cut(s)	187
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	236, 287, 482
BshNI	GGYRCC	2 cut(s)	180, 220
BsiEI	CGRYCG	1 cut(s)	162
BsiSI	CCGG	4 cut(s)	158, 197, 239, 264
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	164, 244, 453
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	2 cut(s)	34, 112
BsnI	GGCC	3 cut(s)	236, 287, 482
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	5 cut(s)	110, 178, 188, 215, 218
BspANI	GGCC	3 cut(s)	236, 287, 482
BspCNI	CTCAG	3 cut(s)	144, 372, 483
BspLI	GGNNCC	4 cut(s)	137, 182, 222, 237
BspPI	GGATC	1 cut(s)	121
BspT107I	GGYRCC	2 cut(s)	180, 220
BsrDI	GCAATG	1 cut(s)	496
BsrFI	RCCGGY	2 cut(s)	157, 196
BsrGI	TGTACA	1 cut(s)	327
BssAI	RCCGGY	2 cut(s)	157, 196
BssECI	CCNNGG	4 cut(s)	19, 29, 224, 237
BssMI	GATC	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	2 cut(s)	19, 29
Bst2UI	CCWGG	1 cut(s)	365
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	181
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	3 cut(s)	131, 380, 470
BstF5I	GGATG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	126
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	237, 363
BstV1I	GCAGC	1 cut(s)	187
Bsu36I	CCTNAGG	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	236, 287, 482
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	527
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	2 cut(s)	157, 196
Cfr13I	GGNCC	3 cut(s)	112, 135, 235
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	131, 380, 470
DinI	GGCGCC	1 cut(s)	182
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
DriI	GACNNNNNGTC	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	303
Eam1105I	GACNNNNNGTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	19, 29
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	112, 135
Eco81I	CCTNAGG	1 cut(s)	131
EcoO109I	RGGNCCY	2 cut(s)	135, 235
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	2 cut(s)	19, 29
EcoT38I	GRGCYC	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	182
EheI	GGCGCC	1 cut(s)	182
ErhI	CCWWGG	2 cut(s)	19, 29
FaeI	CATG	1 cut(s)	334
FaiI	YATR	1 cut(s)	332
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	195
FblI	GTMKAC	2 cut(s)	6, 162
Fnu4HI	GCNGC	3 cut(s)	176, 179, 216
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	3 cut(s)	176, 179, 216
FspBI	CTAG	3 cut(s)	20, 30, 538
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	3 cut(s)	176, 179, 216
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	3 cut(s)	236, 287, 482
HapII	CCGG	4 cut(s)	158, 197, 239, 264
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	3 cut(s)	119, 311, 410
HpaII	CCGG	4 cut(s)	158, 197, 239, 264
HphI	GGTGA	2 cut(s)	253, 253
Hpy166II	GTNNAC	3 cut(s)	7, 163, 261
Hpy188I	TCNGA	2 cut(s)	210, 381
Hpy188III	TCNNGA	2 cut(s)	103, 407
Hpy8I	GTNNAC	3 cut(s)	7, 163, 261
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	75, 298, 433
HpyCH4V	TGCA	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	3 cut(s)	131, 380, 470
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	1 cut(s)	181
KasI	GGCGCC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	126
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	3 cut(s)	20, 30, 538
MaeIII	GTNAC	2 cut(s)	427, 450
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	3 cut(s)	292, 320, 384
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	2 cut(s)	342, 494
Mly113I	GGCGCC	1 cut(s)	181
MlyI	GAGTC	2 cut(s)	113, 320
MmeI	TCCRAC	1 cut(s)	376
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	4 cut(s)	158, 197, 239, 264
MspR9I	CCNGG	2 cut(s)	239, 365
Mva1269I	GAATGC	2 cut(s)	34, 112
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	187
NarI	GGCGCC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	4 cut(s)	137, 182, 222, 237
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	2 cut(s)	427, 450
PceI	AGGCCT	1 cut(s)	287
PctI	GAATGC	2 cut(s)	34, 112
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	3 cut(s)	177, 180, 217
PleI	GAGTC	2 cut(s)	113, 319
PluTI	GGCGCC	1 cut(s)	184
PpsI	GAGTC	2 cut(s)	113, 319
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	4 cut(s)	137, 182, 222, 237
PspPI	GGNCC	3 cut(s)	112, 135, 235
PspPPI	RGGWCCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	3 cut(s)	176, 179, 216
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	3 cut(s)	112, 135, 235
SchI	GAGTC	2 cut(s)	113, 320
ScrFI	CCNGG	2 cut(s)	239, 365
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	5 cut(s)	67, 101, 117, 137, 471
SfaNI	GCATC	1 cut(s)	357
SfoI	GGCGCC	1 cut(s)	182
SgrAI	CRCCGGYG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	112, 135
Sse9I	AATT	2 cut(s)	342, 494
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	5 cut(s)	110, 178, 188, 215, 218
SspDI	GGCGCC	1 cut(s)	180
SspMI	CTAG	3 cut(s)	20, 30, 538
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	237, 363
StyI	CCWWGG	2 cut(s)	19, 29
TaqI	TCGA	4 cut(s)	102, 117, 162, 282
TasI	AATT	2 cut(s)	342, 494
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	2 cut(s)	181, 218
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	2 cut(s)	427, 450
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	2 cut(s)	427, 450
TspDTI	ATGAA	2 cut(s)	280, 507
TspRI	CASTG	1 cut(s)	432
VpaK11BI	GGWCC	2 cut(s)	112, 135
XapI	RAATTY	1 cut(s)	342
XmaJI	CCTAGG	2 cut(s)	19, 29
XmiI	GTMKAC	2 cut(s)	6, 162
XspI	CTAG	3 cut(s)	20, 30, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.