Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0021505

Physical Location & Seq

Genomic Coordinates Reverse (-)

20745460 .. 20747516

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG222100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGGCGGTTCCGAGGGAGGAGGCTCTGGTGATGGACGGCGTTTTGTTCATGGGAGGAAAAGAGGAGTTCGAGGCCTTCATCTACTTCTTCGGGGAAGAGTCTCTACGAAGGCCAGTTTGTACATGGAAAAGAAAATTTGCATCCAACTTGTTTTCCTGGCAATCAAAATACAGTTCTGTATCTTCTGGTCTTTTTCAAGATTCAGCAGTTGGGTCAGTGACCAATGAGAAGGACACCAAGTCACGGGCAGATGTGAAGCTCAGTCATCTGGCCTCTGGCAATGAATTGACTTCTATTAAAATACAGAAACAAGGTTGGCTGAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0007623 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016559 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N WD40

Protein Analysis

110

Amino Acids

12.34

Weight (kDa)

7.76

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021505)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003380
rosa_samantha	Rh7AG221800 Rh7AG222100 Rh7BG217600 Rh7DG228600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 8
AcsI	RAATTY	1 cut(s)	137
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	200
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	108
AoxI	GGCC	3 cut(s)	75, 113, 273
ApoI	RAATTY	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	43
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	331
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	160
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	35, 80
BshFI	GGCC	3 cut(s)	77, 115, 275
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	3 cut(s)	77, 115, 275
Bsp1407I	TGTACA	1 cut(s)	122
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	3 cut(s)	77, 115, 275
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	289
BsrGI	TGTACA	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	93
BstAUI	TGTACA	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	143
BstMAI	GTCTC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	77, 115, 275
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	2 cut(s)	52, 126
CviJI	RGCY	6 cut(s)	26, 77, 115, 262, 275, 322
CviKI_1	RGCY	6 cut(s)	26, 77, 115, 262, 275, 322
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	1 cut(s)	263
DriI	GACNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	93
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	158
FaeI	CATG	2 cut(s)	55, 129
FaiI	YATR	2 cut(s)	53, 127
FatI	CATG	2 cut(s)	51, 125
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	331
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	3 cut(s)	77, 115, 275
Hin1II	CATG	2 cut(s)	55, 129
HinfI	GANTC	2 cut(s)	101, 203
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	88, 105, 226
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	55, 129
LpnPI	CCDG	7 cut(s)	14, 129, 145, 172, 174, 257, 264
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	220, 243
MboII	GAAGA	3 cut(s)	82, 110, 177
MluCI	AATT	2 cut(s)	137, 287
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	9, 13, 16, 50, 58, 67, 286
MseI	TTAA	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
NlaIII	CATG	2 cut(s)	55, 129
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	220, 243
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	12
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	2 cut(s)	264, 319
SfaNI	GCATC	1 cut(s)	152
Sse9I	AATT	2 cut(s)	137, 287
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	1 cut(s)	331
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	137, 287
TatI	WGTACW	1 cut(s)	122
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	2 cut(s)	220, 243
Tsp45I	GTSAC	2 cut(s)	220, 243
TspDTI	ATGAA	3 cut(s)	40, 70, 300
TspRI	CASTG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123
XspI	CTAG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.