Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0021505

Physical Location & Seq

Genomic Coordinates Reverse (-)

22553587 .. 22555320

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG228600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTAGACAGGGCTCTCCTAGGCTTTCCTAGGCATTCTGTGTTGAGAGTGAGCGATGGAGAACCTTCACGGCAACATCACTTGCTGAAAGGAGGAAGCTTCGAGAATGCGGACCTCGACTCGCCGCTCCTCAGGTCCCTGCGAGGCTCTCACTCGCCGGTCAACGGCTTCAAGCAGCGGCGCCACCGGCTATCGCCGGTGGATAATCTGATGGCGGCGGTGCCGAGGGAGGAGGCTCTGGTGATGGACGGCGTTTTGTTCATGGGAGGAAAAGAGGAGTTCGAGGCCTTCATTTACATCTTTGGGGAAGAGTCTCTACGAAGGCCAGGTCTTGAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

113

Amino Acids

12.67

Weight (kDa)

6.51

Isoelectric Point (pI)

67.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021505)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003380
rosa_samantha	Rh7AG221800 Rh7AG222100 Rh7BG217600 Rh7DG228600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	180, 220
AccBSI	CCGCTC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	5 cut(s)	110, 125, 178, 215, 218
AcyI	GRCGYC	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	172, 335
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	318
AoxI	GGCC	2 cut(s)	285, 323
ApeKI	GCWGC	1 cut(s)	175
ArsI	GACNNNNNNTTYG	1 cut(s)	313
AspA2I	CCTAGG	2 cut(s)	19, 29
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	112, 135
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	112, 135
AvrII	CCTAGG	2 cut(s)	19, 29
AxyI	CCTNAGG	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	180, 220
BanII	GRGCYC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	300, 332
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	3 cut(s)	50, 205, 238
BceAI	ACGGC	3 cut(s)	86, 181, 265
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	2 cut(s)	20, 30
BfoI	RGCGCY	1 cut(s)	184
BisI	GCNGC	4 cut(s)	125, 176, 179, 216
BlnI	CCTAGG	2 cut(s)	19, 29
BlsI	GCNGC	4 cut(s)	126, 177, 180, 217
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	2 cut(s)	112, 135
BmgT120I	GGNCC	2 cut(s)	112, 135
BmiI	GGNNCC	3 cut(s)	137, 182, 222
BmrFI	CCNGG	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	19, 29, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse118I	RCCGGY	3 cut(s)	157, 186, 196
Bse21I	CCTNAGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	19, 29, 224
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	145
BseRI	GAGGAG	3 cut(s)	119, 245, 290
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	2 cut(s)	287, 325
BshNI	GGYRCC	2 cut(s)	180, 220
BsiSI	CCGG	3 cut(s)	158, 187, 197
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	2 cut(s)	34, 112
BsnI	GGCC	2 cut(s)	287, 325
Bsp1286I	GDGCHC	1 cut(s)	16
BspACI	CCGC	5 cut(s)	110, 125, 178, 215, 218
BspANI	GGCC	2 cut(s)	287, 325
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	3 cut(s)	137, 182, 222
BspT107I	GGYRCC	2 cut(s)	180, 220
BsrBI	CCGCTC	1 cut(s)	127
BsrFI	RCCGGY	3 cut(s)	157, 186, 196
BssAI	RCCGGY	3 cut(s)	157, 186, 196
BssECI	CCNNGG	3 cut(s)	19, 29, 224
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	2 cut(s)	19, 29
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	187
Bsu36I	CCTNAGG	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	287, 325
BtgZI	GCGATG	1 cut(s)	69
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	3 cut(s)	157, 186, 196
Cfr13I	GGNCC	2 cut(s)	112, 135
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	9 cut(s)	14, 24, 99, 147, 168, 190, 236, 287, 325
CviKI_1	RGCY	9 cut(s)	14, 24, 99, 147, 168, 190, 236, 287, 325
DdeI	CTNAG	1 cut(s)	131
DinI	GGCGCC	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	19, 29
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	112, 135
Eco81I	CCTNAGG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	19, 29
EcoT38I	GRGCYC	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	182
EheI	GGCGCC	1 cut(s)	182
ErhI	CCWWGG	2 cut(s)	19, 29
FaeI	CATG	1 cut(s)	265
FaiI	YATR	1 cut(s)	263
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	4 cut(s)	125, 176, 179, 216
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	125, 176, 179, 216
FspBI	CTAG	2 cut(s)	20, 30
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	4 cut(s)	125, 176, 179, 216
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	287, 325
HapII	CCGG	3 cut(s)	158, 187, 197
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	3 cut(s)	119, 311, 335
HpaII	CCGG	3 cut(s)	158, 187, 197
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	7, 163
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	3 cut(s)	103, 332, 339
Hpy8I	GTNNAC	2 cut(s)	7, 163
HpyAV	CCTTC	3 cut(s)	75, 298, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	1 cut(s)	181
KasI	GGCGCC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	7 cut(s)	118, 152, 171, 200, 210, 224, 312
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	20, 30
MbiI	CCGCTC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	16
Mly113I	GGCGCC	1 cut(s)	181
MlyI	GAGTC	2 cut(s)	113, 320
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	3 cut(s)	158, 187, 197
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	2 cut(s)	34, 112
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	187
NarI	GGCGCC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	3 cut(s)	137, 182, 222
NmeAIII	GCCGAG	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	287
PctI	GAATGC	2 cut(s)	34, 112
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	126, 177, 180, 217
PleI	GAGTC	2 cut(s)	113, 319
PluTI	GGCGCC	1 cut(s)	184
PpsI	GAGTC	2 cut(s)	113, 319
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	3 cut(s)	137, 182, 222
PspPI	GGNCC	2 cut(s)	112, 135
PspPPI	RGGWCCY	1 cut(s)	135
SatI	GCNGC	4 cut(s)	125, 176, 179, 216
Sau96I	GGNCC	2 cut(s)	112, 135
SchI	GAGTC	2 cut(s)	113, 320
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	5 cut(s)	67, 101, 117, 137, 331
SfoI	GGCGCC	1 cut(s)	182
SgrAI	CRCCGGYG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	112, 135
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	5 cut(s)	110, 125, 178, 215, 218
SspDI	GGCGCC	1 cut(s)	180
SspMI	CTAG	2 cut(s)	20, 30
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	2 cut(s)	19, 29
TaqI	TCGA	3 cut(s)	102, 117, 282
TauI	GCSGC	3 cut(s)	127, 181, 218
TfiI	GAWTC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	250, 280
VpaK11BI	GGWCC	2 cut(s)	112, 135
XmaJI	CCTAGG	2 cut(s)	19, 29
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	2 cut(s)	20, 30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.