RLG00000003446

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0021507
Physical Location & Seq
Reverse (-)
48607293 .. 48607869
577 bp
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UTR
Exon/CDS
Intron
RLM00000003446

Sequence Viewer

Length: 417 bp
ATGTTAGTGGTGGTGGTTGTGGAGCTAACTTGCGCGGTGGTGGTTGTGGAGCTAACTTGCGCGGGTGAAGCGCGTGAAGGGGGGCAAGATAAAGAGAAGGGAAGGAAAAAAAGTGTGGTGTGGCCATTGTTGAAGAGGATGAGGATGAGGAAGAAGAGGACCATGAGGAAGAAAAAAGGGCATAGCTTGAGTGAGAATAAAGCAGAAGAGTTTGGTGAAGATGAGAATGTGGAAAATTTGGGTGATGGGGATGAGCCCAAGACCCTGGAAGTGGAGGAGATTCAGGTGAAGCCGGAGGAGATTTCAGTGTCTCTAATAACTCCGGCAGATTTTCAGAGGATGGTGATGCCCGGTTTTGACTTTCGCGATCCAGTTGTGAAGTTAGAAAAAATTGGAAAAATGTGGAAGTTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

139

Amino Acids

15.74

Weight (kDa)

8.5

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021507)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003446 RLG00000013706 RLG00000036251
rosa_multiflora Rmu_sc0001322.1_g000007 Rmu_sc0004923.1_g000009

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 35, 62, 73, 366
AciI CCGC 2 cut(s) 35, 62
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 3 cut(s) 25, 52, 186
AluI AGCT 3 cut(s) 25, 52, 186
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 1 cut(s) 362
AoxI GGCC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 235
AspLEI GCGC 3 cut(s) 35, 62, 73
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 5 cut(s) 77, 227, 254, 298, 355
AvaII GGWCC 1 cut(s) 159
BalI TGGCCA 1 cut(s) 124
BanII GRGCYC 1 cut(s) 258
BccI CCATC 2 cut(s) 239, 334
BciT130I CCWGG 1 cut(s) 266
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 315
Bme1390I CCNGG 2 cut(s) 266, 351
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 266, 351
BmsI GCATC 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 4 cut(s) 144, 150, 256, 345
BseLI CCNNNNNNNGG 1 cut(s) 271
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 2 cut(s) 290, 311
Bsh1236I CGCG 4 cut(s) 35, 62, 73, 366
BshFI GGCC 1 cut(s) 124
BsiSI CCGG 3 cut(s) 293, 323, 351
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 315
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 367
Bsp68I TCGCGA 1 cut(s) 366
BspACI CCGC 2 cut(s) 35, 62
BspANI GGCC 1 cut(s) 124
BspFNI CGCG 4 cut(s) 35, 62, 73, 366
BspPI GGATC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 266
Bst6I CTCTTC 3 cut(s) 128, 149, 201
BstF5I GGATG 4 cut(s) 144, 150, 256, 345
BstFNI CGCG 4 cut(s) 35, 62, 73, 366
BstHHI GCGC 3 cut(s) 35, 62, 73
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 264, 349
BstUI CGCG 4 cut(s) 35, 62, 73, 366
BstXI CCANNNNNNTGG 1 cut(s) 265
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 4 cut(s) 144, 150, 256, 345
BtsIMutI CAGTG 1 cut(s) 312
BtuMI TCGCGA 1 cut(s) 366
CfoI GCGC 3 cut(s) 35, 62, 73
Cfr13I GGNCC 1 cut(s) 159
CviAII CATG 1 cut(s) 163
CviJI RGCY 6 cut(s) 25, 52, 124, 186, 256, 292
CviKI_1 RGCY 6 cut(s) 25, 52, 124, 186, 256, 292
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 3 cut(s) 128, 149, 201
EarI CTCTTC 3 cut(s) 128, 149, 201
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 1 cut(s) 166
FaiI YATR 2 cut(s) 164, 183
FatI CATG 1 cut(s) 162
FauI CCCGC 1 cut(s) 55
FokI GGATG 4 cut(s) 151, 157, 263, 352
FriOI GRGCYC 1 cut(s) 258
GlaI GCGC 3 cut(s) 34, 61, 72
HaeIII GGCC 1 cut(s) 124
HapII CCGG 3 cut(s) 293, 323, 351
HhaI GCGC 3 cut(s) 35, 62, 73
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 3 cut(s) 33, 60, 71
HinP1I GCGC 3 cut(s) 33, 60, 71
HinfI GANTC 1 cut(s) 280
HpaII CCGG 3 cut(s) 293, 323, 351
HphI GGTGA 5 cut(s) 77, 227, 254, 298, 355
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 1 cut(s) 365
HpyAV CCTTC 3 cut(s) 71, 91, 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 3 cut(s) 33, 60, 71
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 2 cut(s) 22, 49
LpnPI CCDG 7 cut(s) 251, 269, 278, 306, 336, 364, 384
LweI GCATC 1 cut(s) 336
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 6 cut(s) 145, 163, 166, 181, 218, 230
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 2 cut(s) 235, 390
MluNI TGGCCA 1 cut(s) 124
MnlI CCTC 8 cut(s) 129, 135, 141, 150, 159, 268, 289, 330
Mox20I TGGCCA 1 cut(s) 124
MscI TGGCCA 1 cut(s) 124
MseI TTAA 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 124
MspI CCGG 3 cut(s) 293, 323, 351
MspR9I CCNGG 2 cut(s) 266, 351
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 4 cut(s) 35, 62, 73, 366
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 351
NdeII GATC 1 cut(s) 367
NlaIII CATG 1 cut(s) 166
NruI TCGCGA 1 cut(s) 366
PfeI GAWTC 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspPI GGNCC 1 cut(s) 159
RruI TCGCGA 1 cut(s) 366
SaqAI TTAA 1 cut(s) 410
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 2 cut(s) 266, 351
SduI GDGCHC 1 cut(s) 258
SetI ASST 4 cut(s) 27, 54, 188, 288
SfaNI GCATC 1 cut(s) 336
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 2 cut(s) 235, 390
SsiI CCGC 2 cut(s) 35, 62
StyD4I CCNGG 2 cut(s) 264, 349
TasI AATT 2 cut(s) 235, 390
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 1 cut(s) 312
TspRI CASTG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.