RLG00000013706

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0021507
Physical Location & Seq
Forward (+)
36198115 .. 36198568
454 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013706

Sequence Viewer

Length: 342 bp
ATGGCCATTGCTGAAGAGGACGAGGATGAGGAAGAAGAAGACCATGAGGAGAAAAAGGCTTTCGCCGGAGATCGAGAAAGGAAATGGGTGTGGCGGCGGCAGCGGCATAGCTTGAGTGAGAATAAAGGTGAAGAGTTTGGTGAAGATGAGGATGTGGAGGATTTGGGTGATGGGGATGAGCCCAAGACCTTGGAAGCAGAGGAGATTCAGGTGAAGCCGGAGGGGATTTCAGTGTCTCCAATAACTCCAGCAGATTTTCAGAGGATGGTGATGCCCGGTTTTAACTTTCACGATCCAGTTATGAAGTTAGAACAAATTGGGAAAATGTGGAAGTTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

114

Amino Acids

13.19

Weight (kDa)

4.46

Isoelectric Point (pI)

62.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021507)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003446 RLG00000013706 RLG00000036251
rosa_multiflora Rmu_sc0001322.1_g000007 Rmu_sc0004923.1_g000009

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 94, 97, 103
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 33
AluBI AGCT 1 cut(s) 111
AluI AGCT 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 287
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 5 cut(s) 140, 152, 179, 223, 280
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 164, 259
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 240
BisI GCNGC 4 cut(s) 95, 98, 101, 104
BlsI GCNGC 4 cut(s) 96, 99, 102, 105
Bme1390I CCNGG 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 4 cut(s) 31, 157, 181, 270
BseMI GCAATG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 2 cut(s) 62, 215
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 3 cut(s) 66, 218, 276
BsmAI GTCTC 1 cut(s) 240
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 70, 292
BspACI CCGC 3 cut(s) 94, 97, 103
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 2 cut(s) 70, 292
BssT1I CCWWGG 1 cut(s) 189
Bst6I CTCTTC 2 cut(s) 9, 126
BstF5I GGATG 4 cut(s) 31, 157, 181, 270
BstKTI GATC 2 cut(s) 73, 295
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 70, 292
BstMWI GCNNNNNNNGC 2 cut(s) 100, 103
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 4 cut(s) 31, 157, 181, 270
BtsIMutI CAGTG 1 cut(s) 237
CviAII CATG 1 cut(s) 44
CviJI RGCY 5 cut(s) 5, 59, 111, 181, 217
CviKI_1 RGCY 5 cut(s) 5, 59, 111, 181, 217
DpnI GATC 2 cut(s) 72, 294
DpnII GATC 2 cut(s) 70, 292
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 9, 126
EarI CTCTTC 2 cut(s) 9, 126
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 47
FaiI YATR 3 cut(s) 45, 108, 302
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 4 cut(s) 95, 98, 101, 104
FokI GGATG 4 cut(s) 38, 164, 188, 277
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 4 cut(s) 95, 98, 101, 104
GluI GCNGC 4 cut(s) 95, 98, 101, 104
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 66, 218, 276
Hin1II CATG 1 cut(s) 47
HinfI GANTC 1 cut(s) 205
HpaII CCGG 3 cut(s) 66, 218, 276
HphI GGTGA 5 cut(s) 140, 152, 179, 223, 280
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 2 cut(s) 74, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 103
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 2 cut(s) 70, 292
LpnPI CCDG 6 cut(s) 79, 194, 231, 261, 289, 309
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 261
MalI GATC 2 cut(s) 72, 294
MboI GATC 2 cut(s) 70, 292
MboII GAAGA 6 cut(s) 26, 44, 47, 50, 143, 155
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 315
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 9 cut(s) 10, 16, 22, 40, 142, 151, 193, 214, 255
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 282, 335
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 3 cut(s) 66, 218, 276
MspR9I CCNGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 100, 103
NciI CCSGG 1 cut(s) 276
NdeII GATC 2 cut(s) 70, 292
NlaIII CATG 1 cut(s) 47
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 4 cut(s) 96, 99, 102, 105
SaqAI TTAA 2 cut(s) 282, 335
SatI GCNGC 4 cut(s) 95, 98, 101, 104
Sau3AI GATC 2 cut(s) 70, 292
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 183
SetI ASST 4 cut(s) 113, 130, 191, 213
SfaNI GCATC 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 1 cut(s) 315
SsiI CCGC 3 cut(s) 94, 97, 103
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 189
TaqI TCGA 1 cut(s) 73
TasI AATT 1 cut(s) 315
TauI GCSGC 3 cut(s) 97, 100, 106
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 282, 335
Tru9I TTAA 2 cut(s) 282, 335
TscAI CASTG 1 cut(s) 237
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 317
TspRI CASTG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.