Rmu_sc0004923.1_g000009

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004923.1
OG0021507
Physical Location & Seq
Forward (+)
19816 .. 21690
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004923.1_g000009.1.cds

Sequence Viewer

Length: 873 bp
atggtggataacatgccagggcatagcttgagtgagaataaatgggaagagtttggtgaagatgagaatgtggaggatttgggtgatggggatgagcccaagacctcggaagcagaggagattcaggtgaagccggaggagatttcagtgtctccaataactccagcgacaattgagcattcgaagacagcccaaccagattttcagaggatggtgatgcccggaggaaaagaagtggaggaggttgagggagcaggaagtgaagatggagagagctggttgattctgagttttcaattgggattggtggcgaggaggctgatgtcctatgtggccattaacttagagcaagtcatgatgagttgggacacggtggccaattcaacctcgaacttcgggagtttggggtgcatcactagccaatccatgaaggttattaagataatgccaaacttgcttcctaattattcgatatttaccagctctgcctcaactccatggaaatcgggtctccgcaatttttcggcagccctacaaatttcacttctaaaggatgcggtttccattttcgaaaaccaccgcggtaaccctccctctttcctcccccgcactctctctcattctcttcgggtttttctgttttccgtccaatcttctccgtccggccaccaaaccgccagctacaggtctgcatcgatgcgtctcctccccctcatgaagcctgcggtggtggctcacggtgatttggccggaattttgcaaatcaagcttccacagtttactctagcagtttggggtcaacgccgatttctccagattccggccacttccggtgctgaaactgaccattctggaaagcctatcctccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

290

Amino Acids

31.78

Weight (kDa)

5.29

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021507)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003446 RLG00000013706 RLG00000036251
rosa_multiflora Rmu_sc0001322.1_g000007 Rmu_sc0004923.1_g000009

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 582
AciI CCGC 7 cut(s) 514, 557, 580, 582, 607, 675, 725
AcoI YGGCCR 5 cut(s) 333, 375, 664, 747, 822
AcsI RAATTY 2 cut(s) 537, 753
AfiI CCNNNNNNNGG 2 cut(s) 684, 820
AgsI TTSAA 2 cut(s) 296, 384
AjnI CCWGG 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 5 cut(s) 27, 276, 483, 681, 769
AluI AGCT 5 cut(s) 27, 276, 483, 681, 769
Alw26I GTCTC 3 cut(s) 156, 515, 707
AoxI GGCC 5 cut(s) 333, 375, 664, 747, 822
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 2 cut(s) 537, 753
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 5 cut(s) 68, 95, 139, 226, 752
AsuII TTCGAA 2 cut(s) 182, 570
BalI TGGCCA 2 cut(s) 335, 377
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 539
BccI CCATC 3 cut(s) 80, 205, 260
BciT130I CCWGG 1 cut(s) 18
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 3 cut(s) 156, 515, 707
BfaI CTAG 3 cut(s) 417, 785, 871
BfmI CTRYAG 1 cut(s) 682
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme1390I CCNGG 2 cut(s) 18, 222
BmrFI CCNGG 2 cut(s) 18, 222
BmsI GCATC 5 cut(s) 207, 420, 544, 687, 701
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 2 cut(s) 147, 797
Bpu14I TTCGAA 2 cut(s) 182, 570
BpuEI CTTGAG 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 695
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 4 cut(s) 17, 105, 497, 580
BsaWI WCCGGW 1 cut(s) 830
Bsc4I CCNNNNNNNGG 2 cut(s) 684, 820
BseBI CCWGG 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 695
BseDI CCNNGG 4 cut(s) 17, 105, 497, 580
BseGI GGATG 3 cut(s) 97, 216, 559
BseLI CCNNNNNNNGG 2 cut(s) 684, 820
BseMII CTCAG 1 cut(s) 278
BseRI GAGGAG 5 cut(s) 131, 152, 254, 328, 695
BseXI GCAGC 1 cut(s) 539
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 5 cut(s) 335, 377, 666, 749, 824
BshVI ATCGAT 1 cut(s) 695
BsiSI CCGG 6 cut(s) 134, 222, 663, 750, 821, 831
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 684, 820
BsmAI GTCTC 3 cut(s) 156, 515, 707
BsmBI CGTCTC 1 cut(s) 707
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 5 cut(s) 335, 377, 666, 749, 824
Bso31I GGTCTC 1 cut(s) 515
Bsp119I TTCGAA 2 cut(s) 182, 570
Bsp1286I GDGCHC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 497
BspACI CCGC 7 cut(s) 514, 557, 580, 582, 607, 675, 725
BspANI GGCC 5 cut(s) 335, 377, 666, 749, 824
BspCNI CTCAG 1 cut(s) 279
BspDI ATCGAT 1 cut(s) 695
BspFNI CGCG 1 cut(s) 582
BspHI TCATGA 2 cut(s) 354, 714
BspT104I TTCGAA 2 cut(s) 182, 570
BspTNI GGTCTC 1 cut(s) 515
BssECI CCNNGG 4 cut(s) 17, 105, 497, 580
BssT1I CCWWGG 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 3 cut(s) 373, 740, 777
Bst6I CTCTTC 2 cut(s) 42, 630
BstBI TTCGAA 2 cut(s) 182, 570
BstC8I GCNNGC 2 cut(s) 679, 723
BstDEI CTNAG 2 cut(s) 287, 343
BstDSI CCRYGG 2 cut(s) 497, 580
BstEII GGTNACC 1 cut(s) 584
BstF5I GGATG 3 cut(s) 97, 216, 559
BstFNI CGCG 1 cut(s) 582
BstMAI GTCTC 3 cut(s) 156, 515, 707
BstMWI GCNNNNNNNGC 4 cut(s) 417, 454, 731, 766
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 16
BstPI GGTNACC 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 16, 220
BstSFI CTRYAG 1 cut(s) 682
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 539
BstV2I GAAGAC 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 695
BsuRI GGCC 5 cut(s) 335, 377, 666, 749, 824
BsuTUI ATCGAT 1 cut(s) 695
BtgI CCRYGG 2 cut(s) 497, 580
BtsCI GGATG 3 cut(s) 97, 216, 559
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 679, 723
CciI TCATGA 2 cut(s) 354, 714
Cfr42I CCGCGG 1 cut(s) 583
ClaI ATCGAT 1 cut(s) 695
CseI GACGC 1 cut(s) 689
CviAII CATG 5 cut(s) 13, 355, 427, 498, 715
DdeI CTNAG 2 cut(s) 287, 343
EaeI YGGCCR 5 cut(s) 333, 375, 664, 747, 822
Eam1104I CTCTTC 2 cut(s) 42, 630
EarI CTCTTC 2 cut(s) 42, 630
Eco130I CCWWGG 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 515
Eco91I GGTNACC 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 584
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 497
Esp3I CGTCTC 1 cut(s) 707
FaeI CATG 5 cut(s) 16, 358, 430, 501, 718
FaiI YATR 7 cut(s) 14, 24, 330, 356, 428, 499, 716
FaqI GGGAC 1 cut(s) 380
FatI CATG 5 cut(s) 12, 354, 426, 497, 714
FauI CCCGC 1 cut(s) 614
Fnu4HI GCNGC 1 cut(s) 528
FokI GGATG 3 cut(s) 104, 223, 566
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 3 cut(s) 417, 785, 871
GluI GCNGC 1 cut(s) 528
GsuI CTGGAG 2 cut(s) 147, 797
HaeIII GGCC 5 cut(s) 335, 377, 666, 749, 824
HapII CCGG 6 cut(s) 134, 222, 663, 750, 821, 831
HgaI GACGC 1 cut(s) 689
Hin1II CATG 5 cut(s) 16, 358, 430, 501, 718
HincII GTYRAC 1 cut(s) 800
HindII GTYRAC 1 cut(s) 800
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 3 cut(s) 121, 283, 817
HpaII CCGG 6 cut(s) 134, 222, 663, 750, 821, 831
HphI GGTGA 5 cut(s) 68, 95, 139, 226, 752
Hpy166II GTNNAC 2 cut(s) 780, 800
Hpy188I TCNGA 3 cut(s) 109, 207, 288
Hpy188III TCNNGA 5 cut(s) 355, 397, 715, 814, 852
Hpy8I GTNNAC 2 cut(s) 780, 800
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 3 cut(s) 373, 740, 777
HpyCH4V TGCA 3 cut(s) 411, 692, 760
HpyF10VI GCNNNNNNNGC 4 cut(s) 417, 454, 731, 766
HpyF3I CTNAG 2 cut(s) 287, 343
Hsp92II CATG 5 cut(s) 16, 358, 430, 501, 718
KspI CCGCGG 1 cut(s) 583
LmnI GCTCC 1 cut(s) 251
Lsp1109I GCAGC 1 cut(s) 539
LweI GCATC 5 cut(s) 207, 420, 544, 687, 701
MaeI CTAG 3 cut(s) 417, 785, 871
MaeIII GTNAC 1 cut(s) 584
MboII GAAGA 6 cut(s) 59, 71, 196, 275, 617, 645
MfeI CAATTG 2 cut(s) 171, 296
MhlI GDGCHC 1 cut(s) 99
MlsI TGGCCA 2 cut(s) 335, 377
MluCI AATT 7 cut(s) 171, 296, 379, 463, 517, 537, 753
MluNI TGGCCA 2 cut(s) 335, 377
Mox20I TGGCCA 2 cut(s) 335, 377
MscI TGGCCA 2 cut(s) 335, 377
MseI TTAA 2 cut(s) 339, 438
Msp20I TGGCCA 2 cut(s) 335, 377
MspA1I CMGCKG 1 cut(s) 582
MspI CCGG 6 cut(s) 134, 222, 663, 750, 821, 831
MspR9I CCNGG 2 cut(s) 18, 222
MunI CAATTG 2 cut(s) 171, 296
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 4 cut(s) 417, 454, 731, 766
NciI CCSGG 1 cut(s) 222
NcoI CCATGG 1 cut(s) 497
NlaIII CATG 5 cut(s) 16, 358, 430, 501, 718
NspI RCATGY 1 cut(s) 16
NspV TTCGAA 2 cut(s) 182, 570
PagI TCATGA 2 cut(s) 354, 714
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 3 cut(s) 121, 283, 817
PkrI GCNGC 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 16
PspEI GGTNACC 1 cut(s) 584
PspGI CCWGG 1 cut(s) 16
SacII CCGCGG 1 cut(s) 583
SaqAI TTAA 2 cut(s) 339, 438
SatI GCNGC 1 cut(s) 528
ScrFI CCNGG 2 cut(s) 18, 222
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 5 cut(s) 207, 420, 544, 687, 701
SfcI CTRYAG 1 cut(s) 682
Sfr303I CCGCGG 1 cut(s) 583
SfuI TTCGAA 2 cut(s) 182, 570
SgrBI CCGCGG 1 cut(s) 583
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 7 cut(s) 171, 296, 379, 463, 517, 537, 753
SsiI CCGC 7 cut(s) 514, 557, 580, 582, 607, 675, 725
SspMI CTAG 3 cut(s) 417, 785, 871
StyD4I CCNGG 2 cut(s) 16, 220
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 3 cut(s) 373, 740, 777
TaqI TCGA 5 cut(s) 182, 389, 470, 570, 695
TasI AATT 7 cut(s) 171, 296, 379, 463, 517, 537, 753
TfiI GAWTC 3 cut(s) 121, 283, 817
Tru1I TTAA 2 cut(s) 339, 438
Tru9I TTAA 2 cut(s) 339, 438
TscAI CASTG 1 cut(s) 153
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 2 cut(s) 443, 731
TspGWI ACGGA 2 cut(s) 634, 648
TspRI CASTG 1 cut(s) 153
XapI RAATTY 2 cut(s) 537, 753
XceI RCATGY 1 cut(s) 16
XspI CTAG 3 cut(s) 417, 785, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.