RLG00000004520
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0022856
Physical Location & Seq
Reverse (-)
59986785 .. 59987412
628 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004520

Sequence Viewer

Length: 363 bp
ATGAACAACATCTTGCTCAATGAGCATGATAATGCAAAATTGAGCAACTACGGACTGTCCATTATCTCAGACGAAACTGATAAGTTTATGGCAAACGAAGGCCGTAAGTCATGGCAAATGAAAAGTTTAGAGGATGATGCTTATAGCTTCGGATATATATTGCTCGAGGCTAGTGTTGGAGCTTGCATCTCTGCTAGAAGAGAGGCATTCCTGCTAAATGATATGGCATCTCTTAACAGCCAGGAAGGCAGAAAGCAGCTAGTCGAACGGATAGTTCTAGCAACTTGTTCACAACAATCTTTATCAATTGTGATCTCCATAATGAACAAATGCATTCCTCCACCATACCGGGTCCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

121

Amino Acids

13.48

Weight (kDa)

5.34

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022856)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004520 RLG00000010231
rosa_samantha Rh7CG071100 Rh7DG070600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 357
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 3 cut(s) 147, 182, 259
AluI AGCT 3 cut(s) 147, 182, 259
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 352
BbvI GCAGC 1 cut(s) 268
BceAI ACGGC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 242
BcnI CCSGG 1 cut(s) 350
BfaI CTAG 4 cut(s) 171, 195, 260, 278
BglI GCCNNNNNGGC 1 cut(s) 246
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme1390I CCNGG 2 cut(s) 242, 350
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 2 cut(s) 242, 350
BmsI GCATC 3 cut(s) 127, 195, 236
BpuMI CCSGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 1 cut(s) 349
BsmI GAATGC 2 cut(s) 206, 333
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 1 cut(s) 312
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 353
BssMI GATC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 2 cut(s) 22, 246
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 240, 348
BstV1I GCAGC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 352
CviAII CATG 2 cut(s) 26, 111
CviJI RGCY 6 cut(s) 102, 147, 170, 182, 240, 259
CviKI_1 RGCY 6 cut(s) 102, 147, 170, 182, 240, 259
DdeI CTNAG 1 cut(s) 67
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 335
FaeI CATG 2 cut(s) 29, 114
FaiI YATR 9 cut(s) 27, 89, 112, 144, 156, 158, 224, 320, 346
FatI CATG 2 cut(s) 25, 110
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 4 cut(s) 171, 195, 260, 278
GluI GCNGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 349
Hin1II CATG 2 cut(s) 29, 114
HpaII CCGG 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 70, 152
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 92, 239
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 35, 186, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 246
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 2 cut(s) 29, 114
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 3 cut(s) 224, 227, 254
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 3 cut(s) 127, 195, 236
MaeI CTAG 4 cut(s) 171, 195, 260, 278
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 1 cut(s) 210
MfeI CAATTG 1 cut(s) 306
MluCI AATT 3 cut(s) 38, 306, 357
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 4 cut(s) 124, 160, 196, 348
Mph1103I ATGCAT 1 cut(s) 335
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 2 cut(s) 242, 350
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 2 cut(s) 206, 333
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 22, 246
NciI CCSGG 1 cut(s) 350
NdeII GATC 1 cut(s) 312
NlaIII CATG 2 cut(s) 29, 114
NlaIV GGNNCC 1 cut(s) 353
NsiI ATGCAT 1 cut(s) 335
PaeR7I CTCGAG 1 cut(s) 164
PctI GAATGC 2 cut(s) 206, 333
PkrI GCNGC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 352
PspXI VCTCGAGB 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 242, 350
SetI ASST 3 cut(s) 149, 184, 261
SfaNI GCATC 3 cut(s) 127, 195, 236
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 1 cut(s) 352
SlaI CTCGAG 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 38, 306, 357
SspMI CTAG 4 cut(s) 171, 195, 260, 278
StyD4I CCNGG 2 cut(s) 240, 348
TaaI ACNGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 165, 264
TasI AATT 3 cut(s) 38, 306, 357
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseI GCWGC 1 cut(s) 256
TspDTI ATGAA 3 cut(s) 17, 134, 338
TspGWI ACGGA 2 cut(s) 66, 283
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 357
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 4 cut(s) 171, 195, 260, 278
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.