Rh7DG070600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0022856
Physical Location & Seq
Forward (+)
5423286 .. 5425023
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG070600.1

Sequence Viewer

Length: 231 bp
ATGATGCTTATAGCTTCGGATATATATTGCTCGAGGCTATTGTTGGAGCTTCCGTCTCTGTTAGAAGATCGAGAGGCATTCCTGCTAAATGATATGCTGCCGGAGCTCCGACCGTCCGCCGCCACTCAATTTCGAAGCAAAGTACCAACCCCTAGATCTTTGAGCTTCTCCCAATTCCAGCTAAAATTACCGAAAGTCGGAAACAGGTGCCTCTCAATCTCTCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.61

Weight (kDa)

8.8

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022856)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004520 RLG00000010231
rosa_samantha Rh7CG071100 Rh7DG070600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 207
AciI CCGC 2 cut(s) 117, 120
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 197
AluBI AGCT 5 cut(s) 14, 49, 106, 165, 181
AluI AGCT 5 cut(s) 14, 49, 106, 165, 181
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 97
AsuII TTCGAA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 31
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 1 cut(s) 153
BglII AGATCT 1 cut(s) 155
BisI GCNGC 2 cut(s) 98, 120
BlsI GCNGC 2 cut(s) 99, 121
BmeT110I CYCGRG 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 31
Bsp119I TTCGAA 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 67, 155
BspACI CCGC 2 cut(s) 117, 120
BspLI GGNNCC 1 cut(s) 209
BspT104I TTCGAA 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 207
BssMI GATC 2 cut(s) 67, 155
Bst4CI ACNGT 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 228
BstKTI GATC 2 cut(s) 70, 158
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 2 cut(s) 67, 155
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
Csp6I GTAC 1 cut(s) 143
CviAII CATG 1 cut(s) 224
CviJI RGCY 6 cut(s) 14, 37, 49, 106, 165, 181
CviKI_1 RGCY 6 cut(s) 14, 37, 49, 106, 165, 181
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 69, 157
DpnII GATC 2 cut(s) 67, 155
EciI GGCGGA 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 11, 23, 25, 95, 225
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 98, 120
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 98, 120
FspBI CTAG 1 cut(s) 153
GluI GCNGC 2 cut(s) 98, 120
HapII CCGG 1 cut(s) 101
Hin1II CATG 1 cut(s) 227
HpaII CCGG 1 cut(s) 101
Hpy188I TCNGA 3 cut(s) 19, 110, 200
Hpy188III TCNNGA 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 2 cut(s) 67, 155
LmnI GCTCC 3 cut(s) 46, 103, 111
LpnPI CCDG 4 cut(s) 95, 114, 190, 191
Lsp1109I GCAGC 1 cut(s) 84
MaeI CTAG 1 cut(s) 153
MalI GATC 2 cut(s) 69, 157
MboI GATC 2 cut(s) 67, 155
MboII GAAGA 1 cut(s) 77
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 3 cut(s) 128, 173, 185
MmeI TCCRAC 3 cut(s) 24, 133, 178
MnlI CCTC 3 cut(s) 27, 67, 221
MspI CCGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 2 cut(s) 67, 155
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 209
NspV TTCGAA 1 cut(s) 133
PaeR7I CTCGAG 1 cut(s) 31
PctI GAATGC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 99, 121
Psp124BI GAGCTC 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 209
PspXI VCTCGAGB 1 cut(s) 31
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SacI GAGCTC 1 cut(s) 108
SatI GCNGC 2 cut(s) 98, 120
Sau3AI GATC 2 cut(s) 67, 155
SduI GDGCHC 1 cut(s) 108
SetI ASST 6 cut(s) 16, 51, 108, 167, 183, 209
Sfr274I CTCGAG 1 cut(s) 31
SfuI TTCGAA 1 cut(s) 133
SgeI CNNG 8 cut(s) 43, 45, 83, 94, 113, 165, 190, 217
SlaI CTCGAG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 3 cut(s) 128, 173, 185
SsiI CCGC 2 cut(s) 117, 120
SspMI CTAG 1 cut(s) 153
SstI GAGCTC 1 cut(s) 108
TaaI ACNGT 1 cut(s) 114
TaqI TCGA 3 cut(s) 32, 70, 133
TasI AATT 3 cut(s) 128, 173, 185
TauI GCSGC 1 cut(s) 122
TseI GCWGC 1 cut(s) 97
TspGWI ACGGA 1 cut(s) 42
XhoI CTCGAG 1 cut(s) 31
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.