RLG00000010231
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0022856
Physical Location & Seq
Forward (+)
64509728 .. 64510809
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010231

Sequence Viewer

Length: 669 bp
ATGCCCGATTCATATGTCCAGAGGGGTGACCAAGCATCAATCATTGGGGGTGCTATTAACTTTGTGAAGGAGCTAGAGCAACAAGTGCAATTCCTCGGTGCTCAAAAGCCAAACAATGACAATTCGGATTTGCCTTTCTCAGACTTCTATAGCTTTCCACAATACTCATCATCAACAACTAGTACCAGTACTAGTACTGCTCATCAGACTAGTCATGAAAATCGATACGATTTTGATCAGAGGCCGTCGGTTGATTTGGGACTGCTCATAAGGGAGAAAGTAGCTGGAGGAAGAAAGAAGGTACGTACTTTGATATTAAGTCGATTCCTTGCTCATGTAAGGGAGGGTGATGTTTACAACTTTGGATTTGTACTACTTGAATCACTCGTCGGACCTATAGTAAGTGGAAAAGGGGAAACCTTTCTGCTGAATGAAATGGCATCATTTGGGAGCCAAGACGGTCGAAGAAGAATTGTGGATCCAGTTGTGTTGACAACTTGCTCACAGGAGTCGTTATCCATTGTGGTATCGATCACAAAGAAATGCATATCTCCAGAAGTATCATCACGTCTCTCTTTCGAAGACGTGCTTTGGAACTTGCAGTATGCAGCTCAAGTCCAGGCCACTGCTGATGCTGATCAAAAATCCGATGCTACATCCGTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

223

Amino Acids

24.44

Weight (kDa)

5.24

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022856)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004520 RLG00000010231
rosa_samantha Rh7CG071100 Rh7DG070600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 473, 486
AfaI GTAC 6 cut(s) 184, 190, 196, 303, 307, 372
AgsI TTSAA 1 cut(s) 380
AhlI ACTAGT 3 cut(s) 179, 191, 209
AjiI CACGTC 2 cut(s) 569, 586
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 5 cut(s) 73, 153, 284, 611, 666
AluI AGCT 5 cut(s) 73, 153, 284, 611, 666
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 575
AlwI GGATC 2 cut(s) 473, 486
AoxI GGCC 2 cut(s) 242, 621
ApeKI GCWGC 1 cut(s) 608
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 38, 359
AsuII TTCGAA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 392
BamHI GGATCC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 620
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 620
BclI TGATCA 2 cut(s) 235, 637
BcoDI GTCTC 1 cut(s) 575
BcuI ACTAGT 3 cut(s) 179, 191, 209
BfaI CTAG 4 cut(s) 74, 180, 192, 210
BfmI CTRYAG 2 cut(s) 148, 396
BisI GCNGC 1 cut(s) 609
BlsI GCNGC 1 cut(s) 610
BmcAI AGTACT 2 cut(s) 190, 196
Bme1390I CCNGG 1 cut(s) 620
Bme18I GGWCC 1 cut(s) 392
BmgBI CACGTC 2 cut(s) 569, 586
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 452, 480
BmrFI CCNGG 1 cut(s) 620
BmsI GCATC 4 cut(s) 44, 449, 622, 640
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 2 cut(s) 306, 537
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 597
Bsa29I ATCGAT 2 cut(s) 223, 530
BsaAI YACGTR 1 cut(s) 305
BsaBI GATNNNNATC 2 cut(s) 234, 636
BsaJI CCNNGG 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 186, 482
Bse8I GATNNNNATC 2 cut(s) 234, 636
BseBI CCWGG 1 cut(s) 620
BseCI ATCGAT 2 cut(s) 223, 530
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 656
BseJI GATNNNNATC 2 cut(s) 234, 636
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 186, 482
BseXI GCAGC 1 cut(s) 620
Bsh1285I CGRYCG 1 cut(s) 463
BshFI GGCC 2 cut(s) 244, 623
BshVI ATCGAT 2 cut(s) 223, 530
BsiEI CGRYCG 1 cut(s) 463
BsiHKAI GWGCWC 1 cut(s) 103
BslFI GGGAC 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 575
BsmBI CGTCTC 1 cut(s) 575
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 2 cut(s) 244, 623
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 4 cut(s) 235, 478, 531, 637
BspANI GGCC 2 cut(s) 244, 623
BspCNI CTCAG 1 cut(s) 152
BspDI ATCGAT 2 cut(s) 223, 530
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 452, 480
BspPI GGATC 2 cut(s) 473, 486
BspT104I TTCGAA 1 cut(s) 579
BsrI ACTGG 2 cut(s) 186, 482
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 4 cut(s) 235, 478, 531, 637
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 85
BstBAI YACGTR 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 579
BstDEI CTNAG 1 cut(s) 139
BstEII GGTNACC 1 cut(s) 26
BstF5I GGATG 1 cut(s) 656
BstKTI GATC 4 cut(s) 238, 481, 534, 640
BstMAI GTCTC 1 cut(s) 575
BstMBI GATC 4 cut(s) 235, 478, 531, 637
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 620
BstPI GGTNACC 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 618
BstSFI CTRYAG 2 cut(s) 148, 396
BstSNI TACGTA 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 620
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
Bsu15I ATCGAT 2 cut(s) 223, 530
BsuRI GGCC 2 cut(s) 244, 623
BsuTUI ATCGAT 2 cut(s) 223, 530
BtrI CACGTC 2 cut(s) 569, 586
BtsCI GGATG 1 cut(s) 656
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 1 cut(s) 624
CciI TCATGA 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 392
ClaI ATCGAT 2 cut(s) 223, 530
Csp6I GTAC 6 cut(s) 183, 189, 195, 302, 306, 371
CviAII CATG 2 cut(s) 215, 335
CviJI RGCY 9 cut(s) 73, 109, 153, 244, 284, 453, 611, 623, 666
CviKI_1 RGCY 9 cut(s) 73, 109, 153, 244, 284, 453, 611, 623, 666
CviQI GTAC 6 cut(s) 183, 189, 195, 302, 306, 371
DdeI CTNAG 1 cut(s) 139
DpnI GATC 4 cut(s) 237, 480, 533, 639
DpnII GATC 4 cut(s) 235, 478, 531, 637
Eco105I TACGTA 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 392
Eco91I GGTNACC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 618
EcoT22I ATGCAT 1 cut(s) 548
Esp3I CGTCTC 1 cut(s) 575
FaeI CATG 2 cut(s) 218, 338
FaiI YATR 9 cut(s) 13, 15, 150, 216, 269, 336, 398, 548, 606
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 1 cut(s) 273
FatI CATG 2 cut(s) 214, 334
FauNDI CATATG 1 cut(s) 13
FbaI TGATCA 2 cut(s) 235, 637
Fnu4HI GCNGC 1 cut(s) 609
FokI GGATG 1 cut(s) 643
Fsp4HI GCNGC 1 cut(s) 609
FspBI CTAG 4 cut(s) 74, 180, 192, 210
GluI GCNGC 1 cut(s) 609
GsuI CTGGAG 2 cut(s) 306, 537
HaeIII GGCC 2 cut(s) 244, 623
Hin1II CATG 2 cut(s) 218, 338
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 4 cut(s) 8, 324, 380, 509
HphI GGTGA 2 cut(s) 38, 359
Hpy166II GTNNAC 2 cut(s) 355, 492
Hpy188I TCNGA 6 cut(s) 127, 142, 207, 240, 392, 649
Hpy188III TCNNGA 3 cut(s) 19, 215, 554
Hpy8I GTNNAC 2 cut(s) 355, 492
Hpy99I CGWCG 2 cut(s) 250, 392
HpyAV CCTTC 2 cut(s) 61, 292
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 3 cut(s) 304, 568, 585
HpyCH4V TGCA 4 cut(s) 88, 546, 601, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 3 cut(s) 304, 568, 585
Hsp92II CATG 2 cut(s) 218, 338
Ksp22I TGATCA 2 cut(s) 235, 637
Kzo9I GATC 4 cut(s) 235, 478, 531, 637
LmnI GCTCC 2 cut(s) 70, 450
LpnPI CCDG 8 cut(s) 32, 199, 270, 491, 495, 567, 605, 632
Lsp1109I GCAGC 1 cut(s) 620
LweI GCATC 4 cut(s) 44, 449, 622, 640
MaeI CTAG 4 cut(s) 74, 180, 192, 210
MaeII ACGT 3 cut(s) 304, 568, 585
MaeIII GTNAC 1 cut(s) 26
MalI GATC 4 cut(s) 237, 480, 533, 639
MboI GATC 4 cut(s) 235, 478, 531, 637
MboII GAAGA 4 cut(s) 303, 477, 480, 593
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 3 cut(s) 89, 121, 471
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 5 cut(s) 15, 104, 234, 281, 337
Mph1103I ATGCAT 1 cut(s) 548
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 2 cut(s) 57, 317
MspR9I CCNGG 1 cut(s) 620
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeI CATATG 1 cut(s) 13
NdeII GATC 4 cut(s) 235, 478, 531, 637
NlaIII CATG 2 cut(s) 218, 338
NlaIV GGNNCC 2 cut(s) 452, 480
NmuCI GTSAC 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 548
NspV TTCGAA 1 cut(s) 579
PagI TCATGA 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 8, 324, 380
PkrI GCNGC 1 cut(s) 610
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
Ppu21I YACGTR 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 618
PspEI GGTNACC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 452, 480
PspPI GGNCC 1 cut(s) 392
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 6 cut(s) 184, 190, 196, 303, 307, 372
RsaNI GTAC 6 cut(s) 183, 189, 195, 302, 306, 371
SaqAI TTAA 2 cut(s) 57, 317
SatI GCNGC 1 cut(s) 609
Sau3AI GATC 4 cut(s) 235, 478, 531, 637
Sau96I GGNCC 1 cut(s) 392
ScaI AGTACT 2 cut(s) 190, 196
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 620
SduI GDGCHC 1 cut(s) 103
SfaNI GCATC 4 cut(s) 44, 449, 622, 640
SfcI CTRYAG 2 cut(s) 148, 396
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 612
SmoI CTYRAG 1 cut(s) 612
SnaBI TACGTA 1 cut(s) 305
SpeI ACTAGT 3 cut(s) 179, 191, 209
Sse9I AATT 3 cut(s) 89, 121, 471
SspMI CTAG 4 cut(s) 74, 180, 192, 210
StyD4I CCNGG 1 cut(s) 618
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 3 cut(s) 307, 571, 588
TaqI TCGA 5 cut(s) 223, 322, 463, 530, 579
TasI AATT 3 cut(s) 89, 121, 471
TatI WGTACW 3 cut(s) 188, 194, 370
TfiI GAWTC 3 cut(s) 8, 324, 380
Tru1I TTAA 2 cut(s) 57, 317
Tru9I TTAA 2 cut(s) 57, 317
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 231, 447
TspGWI ACGGA 1 cut(s) 649
TspRI CASTG 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 4 cut(s) 74, 180, 192, 210
ZrmI AGTACT 2 cut(s) 190, 196
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.