Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0021492

Physical Location & Seq

Genomic Coordinates Forward (+)

60682093 .. 60682455

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004606

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGTAATGACAGTGACACAACCTTTGAGCTTACGGTGAAGAAAGGAGAACCAACTTTGGTACCTCCTGTGGTGGAAACGAAGAACGGTTTCTACTTCCTCTTAAATCTAGATGAGAACACTCCGGCCATAGTTTGTACCTACTACTTTAAATCAGATTCAAAAGGCAACGAAGAAGCTGTCAAAGCCATTAAAAAAGCATTGTCAAAAGTTCTTGTTCATTATTATCCTATGGCAGGAAGGTTCACTAAAAGCTCAGAGGGGAAGGTGAAGGTGATGGTGGATTGCACAGGAGATGGAGCTACTTTTGTTGAAGCTGAAGCAAACTACGAAATGAAGGATTGGAGACATAACAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009712 GO:0009713 GO:0009801 GO:0009802 GO:0009803 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018958 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0033692 GO:0034637 GO:0034645 GO:0042537 GO:0042546 GO:0043170 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0046189 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090430 GO:0090431 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

121

Amino Acids

13.4

Weight (kDa)

6.11

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	13 - 116	5.8e-20	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021492)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004606
rosa_multiflora	Rmu_co8451345.1_g000001 Rmu_sc0001924.1_g000007
rosa_roxburghii	Rroxscaffold_3G00265350
rosa_samantha	Rh7CG108100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	63, 139
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	162, 314
AluBI	AGCT	5 cut(s)	31, 179, 255, 302, 317
AluI	AGCT	5 cut(s)	31, 179, 255, 302, 317
Alw26I	GTCTC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	126
ArsI	GACNNNNNNTTYG	4 cut(s)	8, 40, 165, 197
Asp700I	GAANNNNTTC	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	49, 280, 286
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BanI	GGYRCC	1 cut(s)	61
BccI	CCATC	2 cut(s)	271, 290
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	61
Bst4CI	ACNGT	3 cut(s)	14, 37, 89
BstDEI	CTNAG	1 cut(s)	256
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstMAI	GTCTC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	62, 138
CviJI	RGCY	8 cut(s)	31, 128, 179, 188, 255, 302, 317, 359
CviKI_1	RGCY	8 cut(s)	31, 128, 179, 188, 255, 302, 317, 359
CviQI	GTAC	2 cut(s)	62, 138
DdeI	CTNAG	1 cut(s)	256
DraI	TTTAAA	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	234
FaiI	YATR	3 cut(s)	131, 233, 351
FspBI	CTAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	125
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	3 cut(s)	49, 280, 286
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	157, 259
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	4 cut(s)	234, 259, 265, 331
HpyCH4III	ACNGT	3 cut(s)	14, 37, 89
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	256
KpnI	GGTACC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	4 cut(s)	81, 138, 222, 276
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	14
MboII	GAAGA	3 cut(s)	52, 94, 185
MnlI	CCTC	3 cut(s)	75, 110, 253
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	3 cut(s)	104, 150, 192
MspI	CCGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	185
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	63
PsrI	GAACNNNNNNTAC	2 cut(s)	77, 109
RsaI	GTAC	2 cut(s)	63, 139
RsaNI	GTAC	2 cut(s)	62, 138
SaqAI	TTAA	3 cut(s)	104, 150, 192
SgeI	CNNG	6 cut(s)	80, 122, 137, 227, 249, 303
SspMI	CTAG	1 cut(s)	110
TaaI	ACNGT	3 cut(s)	14, 37, 89
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	3 cut(s)	104, 150, 192
Tru9I	TTAA	3 cut(s)	104, 150, 192
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	209, 350
TspRI	CASTG	1 cut(s)	19
XagI	CCTNNNNNAGG	1 cut(s)	234
XbaI	TCTAGA	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.