Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451345.1

Orthogroup ID

OG0021492

Physical Location & Seq

Genomic Coordinates Reverse (-)

342 .. 1157

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451345.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ctgcaaacgaggtgctgcttggctattcaagtgagcagatattgtgtgatgggggataacaattacaaaacctttgagtgtaagcttattgtgaagaaagaagaaccaactcttgtacctcctgcagcagaaacggagaagggcctctacttcctctcaaatctagatcagaacattgcagtcatagttcgtactctttactattataaatcagattcaaaagggaatgaggacgttgtggaagtcatgaagaaagccttctcaaaggtacttgttcattactatccactggcaggaaggttaagtataagcacagaggggaagctgatagtggattgcacaggagatggagctgtgtttttggaagcggaagctaactgtgaaatggaggaggtaggagacattacaaagccggatcctgtgactcttgggaagctgatttatgatgttcctggtgccaagaacatacttgagattcctcttttggttgctcaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009712 GO:0009713 GO:0009801 GO:0009802 GO:0009803 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018958 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0033692 GO:0034637 GO:0034645 GO:0042537 GO:0042546 GO:0043170 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0046189 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090430 GO:0090431 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

166

Amino Acids

18.4

Weight (kDa)

4.99

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021492)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004606
rosa_multiflora	Rmu_co8451345.1_g000001 Rmu_sc0001924.1_g000007
rosa_roxburghii	Rroxscaffold_3G00265350
rosa_samantha	Rh7CG108100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	455
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	2 cut(s)	410, 423
AfaI	GTAC	3 cut(s)	117, 193, 270
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	29, 219
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	5 cut(s)	85, 325, 353, 374, 436
AluI	AGCT	5 cut(s)	85, 325, 353, 374, 436
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	2 cut(s)	410, 423
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	2 cut(s)	15, 125
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	142
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
BamHI	GGATCC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	455
BarI	GAAGNNNNNNTAC	2 cut(s)	131, 163
BbvI	GCAGC	2 cut(s)	2, 137
BccI	CCATC	2 cut(s)	43, 341
BciT130I	CCWGG	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	16, 126
BlsI	GCNGC	2 cut(s)	17, 127
Bme1390I	CCNGG	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	417, 457
BmrFI	CCNGG	1 cut(s)	453
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	2, 137
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	166, 415
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	417, 457
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	2 cut(s)	410, 423
BspT107I	GGYRCC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	166, 415
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	492
BstKTI	GATC	2 cut(s)	169, 418
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	2 cut(s)	166, 415
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	2, 137
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	3 cut(s)	116, 192, 269
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	9 cut(s)	23, 85, 144, 257, 325, 353, 374, 412, 436
CviKI_1	RGCY	9 cut(s)	23, 85, 144, 257, 325, 353, 374, 412, 436
CviQI	GTAC	3 cut(s)	116, 192, 269
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	2 cut(s)	168, 417
DpnII	GATC	2 cut(s)	166, 415
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	451
FaeI	CATG	1 cut(s)	250
FaiI	YATR	6 cut(s)	185, 207, 248, 308, 444, 467
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	16, 126
Fsp4HI	GCNGC	2 cut(s)	16, 126
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	16, 126
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	413
Hin1II	CATG	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	215, 424, 475
HpaII	CCGG	1 cut(s)	413
Hpy188I	TCNGA	2 cut(s)	171, 214
Hpy188III	TCNNGA	2 cut(s)	164, 247
HpyAV	CCTTC	3 cut(s)	133, 268, 291
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	4, 125, 179, 339
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	166, 415
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	9 cut(s)	135, 275, 279, 327, 426, 432, 438, 465, 479
Lsp1109I	GCAGC	2 cut(s)	2, 137
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	2 cut(s)	168, 417
MboI	GATC	2 cut(s)	166, 415
MboII	GAAGA	3 cut(s)	106, 113, 262
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	9 cut(s)	3, 129, 155, 164, 223, 310, 382, 385, 489
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	1 cut(s)	302
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
NdeII	GATC	2 cut(s)	166, 415
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	2 cut(s)	417, 457
NmuCI	GTSAC	1 cut(s)	421
PagI	TCATGA	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	215, 475
PkrI	GCNGC	2 cut(s)	17, 127
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	417, 457
PspPI	GGNCC	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	3 cut(s)	117, 193, 270
RsaNI	GTAC	3 cut(s)	116, 192, 269
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	16, 126
Sau3AI	GATC	2 cut(s)	166, 415
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	451
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	237
TasI	AATT	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	215, 475
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	15, 125
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	263, 266
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	294
XbaI	TCTAGA	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.