Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0021492

Physical Location & Seq

Genomic Coordinates Reverse (-)

8333081 .. 8333449

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG108100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGTAATGACAGTGACACAACCCTTGAGATTACGGTGAAGAAAGGAAAACCAACTTTGGTACCTCCTGTGGTGGAAACGAGGAAAGGAAGGTTCACTAAAAGCTCAGAGGGGAAGGTGAAGGTGATGGTGGATTGCACAGGAGATGGAGCTATTTTTGTTGAAGCTGAAGCAAACTACGAAATGAAGGATTGGAGACATAACAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009712 GO:0009713 GO:0009801 GO:0009802 GO:0009803 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018958 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0033692 GO:0034637 GO:0034645 GO:0042537 GO:0042546 GO:0043170 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0046189 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090430 GO:0090431 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

70

Amino Acids

7.74

Weight (kDa)

7.86

Isoelectric Point (pI)

25.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	30 - 66	9.8e-06	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021492)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004606
rosa_multiflora	Rmu_co8451345.1_g000001 Rmu_sc0001924.1_g000007
rosa_roxburghii	Rroxscaffold_3G00265350
rosa_samantha	Rh7CG108100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	4 cut(s)	105, 152, 167, 209
AluI	AGCT	4 cut(s)	105, 152, 167, 209
Alw26I	GTCTC	1 cut(s)	190
Asp718I	GGTACC	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	49, 130, 136
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BanI	GGYRCC	1 cut(s)	61
BccI	CCATC	2 cut(s)	121, 140
BcoDI	GTCTC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	14, 37
BstDEI	CTNAG	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	62
CviJI	RGCY	4 cut(s)	105, 152, 167, 209
CviKI_1	RGCY	4 cut(s)	105, 152, 167, 209
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	189
FaiI	YATR	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	207
HphI	GGTGA	3 cut(s)	49, 130, 136
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	4 cut(s)	84, 109, 115, 181
HpyCH4III	ACNGT	2 cut(s)	14, 37
HpyCH4V	TGCA	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	106
KpnI	GGTACC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	2 cut(s)	81, 126
MaeIII	GTNAC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	52
MnlI	CCTC	3 cut(s)	75, 75, 103
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	63
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SetI	ASST	8 cut(s)	67, 95, 107, 120, 126, 154, 169, 211
SgeI	CNNG	4 cut(s)	38, 80, 93, 153
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	14, 37
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	200
TspRI	CASTG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.