Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0021492

Physical Location & Seq

Genomic Coordinates Forward (+)

58753108 .. 58758191

Gene Structure 5084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAAAGCTGTAATAGATGAAGAACCCAACAAACTTCTGGAGACCCACAAGAATACAGCCACCGCCCACCCAAATCGAAAAGATCAAATTCATCACAAAATTGAAATTGGAAAGTCTACAGCAAACAAGAATTCACCTTACGGTGAATCCTTTCCTTTGGTTCCTCCTGTGGTGGAAACGAAGAACGGTTTCTACTTCCTCTTAAATCTAGATGAGAACACTCCGGCCATAGTTTGTACCTACTACTTTAAATCAGATTCAAAAGGCAATGAAGAAGCTGTCGAAGTCATTAAAAAAGCATTGTCAAAAGTTCTTGTTCATTATTATCCTGTGGCAGGAAGGTTCACTAAAAGCTCAGAGGGGAAGATGAAGGTGATGGTGGATTGCACAGGAGATGGAGCTACTTTTGTTGAAGCTGAAGCAAACTACGAAATGAAGGATTGGAGACATAACAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009712 GO:0009713 GO:0009801 GO:0009802 GO:0009803 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018958 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0033692 GO:0034637 GO:0034645 GO:0042537 GO:0042546 GO:0043170 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0046189 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090430 GO:0090431 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

153

Amino Acids

17.22

Weight (kDa)

7.01

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	56 - 149	1.4e-18	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021492)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004606
rosa_multiflora	Rmu_co8451345.1_g000001 Rmu_sc0001924.1_g000007
rosa_roxburghii	Rroxscaffold_3G00265350
rosa_samantha	Rh7CG108100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	116
AciI	CCGC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	87, 130
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	104, 261, 413
AluBI	AGCT	5 cut(s)	8, 278, 354, 401, 416
AluI	AGCT	5 cut(s)	8, 278, 354, 401, 416
Alw26I	GTCTC	2 cut(s)	35, 439
AoxI	GGCC	1 cut(s)	225
ApoI	RAATTY	2 cut(s)	87, 130
Asp700I	GAANNNNTTC	2 cut(s)	150, 188
AsuHPI	GGTGA	3 cut(s)	126, 155, 385
BccI	CCATC	2 cut(s)	370, 389
BcoDI	GTCTC	2 cut(s)	35, 439
BfaI	CTAG	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	35, 439
BsnI	GGCC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	368
BspLI	GGNNCC	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	274
BssMI	GATC	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	143, 188
BstDEI	CTNAG	1 cut(s)	355
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	2 cut(s)	35, 439
BstMBI	GATC	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	237
CviJI	RGCY	8 cut(s)	8, 59, 227, 278, 354, 401, 416, 458
CviKI_1	RGCY	8 cut(s)	8, 59, 227, 278, 354, 401, 416, 458
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
DraI	TTTAAA	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	438
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	130
FaiI	YATR	2 cut(s)	230, 450
FblI	GTMKAC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	1 cut(s)	224
HinfI	GANTC	2 cut(s)	146, 257
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	3 cut(s)	126, 155, 385
Hpy166II	GTNNAC	2 cut(s)	117, 345
Hpy188I	TCNGA	2 cut(s)	256, 358
Hpy188III	TCNNGA	2 cut(s)	38, 209
Hpy8I	GTNNAC	2 cut(s)	117, 345
HpyAV	CCTTC	3 cut(s)	333, 364, 430
HpyCH4III	ACNGT	2 cut(s)	143, 188
HpyCH4V	TGCA	1 cut(s)	387
HpyF3I	CTNAG	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	398
LpnPI	CCDG	6 cut(s)	23, 180, 237, 321, 342, 375
MaeI	CTAG	1 cut(s)	209
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	4 cut(s)	32, 193, 284, 376
MluCI	AATT	4 cut(s)	87, 99, 105, 130
MnlI	CCTC	3 cut(s)	174, 209, 352
MroXI	GAANNNNTTC	2 cut(s)	150, 188
MseI	TTAA	3 cut(s)	203, 249, 291
MspI	CCGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	162
PdmI	GAANNNNTTC	2 cut(s)	150, 188
PfeI	GAWTC	2 cut(s)	146, 257
PspN4I	GGNNCC	1 cut(s)	162
PsrI	GAACNNNNNNTAC	2 cut(s)	176, 208
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	203, 249, 291
Sau3AI	GATC	1 cut(s)	82
SetI	ASST	9 cut(s)	10, 139, 242, 280, 344, 356, 375, 403, 418
SfcI	CTRYAG	1 cut(s)	117
Sse9I	AATT	4 cut(s)	87, 99, 105, 130
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	143, 188
TaqI	TCGA	2 cut(s)	76, 282
TasI	AATT	4 cut(s)	87, 99, 105, 130
TfiI	GAWTC	2 cut(s)	146, 257
Tru1I	TTAA	3 cut(s)	203, 249, 291
Tru9I	TTAA	3 cut(s)	203, 249, 291
TspDTI	ATGAA	7 cut(s)	17, 33, 80, 285, 308, 383, 449
XagI	CCTNNNNNAGG	1 cut(s)	333
XapI	RAATTY	2 cut(s)	87, 130
XbaI	TCTAGA	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	116
XmnI	GAANNNNTTC	2 cut(s)	150, 188
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.