RLG00000005967

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019918
Physical Location & Seq
Forward (+)
3136000 .. 3137926
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005967

Sequence Viewer

Length: 429 bp
ATGAAAGAGACCAACGTGGTTCCGGCCAACAGTACGTATGGAGACCAACGTGATTCCGGCGAACAGCAAGGAGACCAACGTTGTTCAGGGCATCATCACAGAGACCAACGTCATTCCAGCGACTACAGAGACCAACATCTTCAGCTCCATCAACAACATCGGTTTCTCATTTCACAACACCCAACCTTCCCGCTCCCTTCAATCCATCAACGTCGTTTCGTCGTCGTCGGCAATGGCCAACCTGGCTGTATCTCAGATCCTCTCAACGTCCGATTGGATTATGCTTTGTTCAGGGCACCTTACCCTGTCGTTCAAGACAGTTTACTGGCATATTACAACATGTTTGTCGCTACGGTTGATGCTTTCTACTCTGCAATTGAGAAAGCTGGCAAGCCAGATGTCAATAGCAAGGTATCTAAGTCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

143

Amino Acids

16.11

Weight (kDa)

7.88

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 85 - 142 5e-07 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019918)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442841
rosa_laevigata RLG00000005967
rosa_multiflora Rmu_co8050374.1_g000001 Rmu_sc0004359.1_g000031
rosa_samantha Rh2AG093300 Rh4AG396300 Rh4DG403100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 193
AciI CCGC 1 cut(s) 191
AclI AACGTT 1 cut(s) 79
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 2 cut(s) 24, 235
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 2 cut(s) 201, 314
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 2 cut(s) 145, 386
AluI AGCT 2 cut(s) 145, 386
Alw26I GTCTC 5 cut(s) 2, 36, 66, 96, 123
AlwI GGATC 1 cut(s) 251
AoxI GGCC 2 cut(s) 24, 235
BaeGI GKGCMC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 237
BanI GGYRCC 1 cut(s) 295
BccI CCATC 2 cut(s) 156, 213
BciT130I CCWGG 1 cut(s) 243
BcoDI GTCTC 5 cut(s) 2, 36, 66, 96, 123
BfmI CTRYAG 1 cut(s) 124
BglI GCCNNNNNGGC 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 21, 297
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 2 cut(s) 100, 349
BoxI GACNNNNGTC 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 36
BsaI GGTCTC 5 cut(s) 2, 36, 66, 96, 123
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 243
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 330
BseSI GKGCMC 1 cut(s) 298
BshFI GGCC 2 cut(s) 26, 237
BshNI GGYRCC 1 cut(s) 295
BsiSI CCGG 2 cut(s) 23, 57
BsmAI GTCTC 5 cut(s) 2, 36, 66, 96, 123
BsnI GGCC 2 cut(s) 26, 237
Bso31I GGTCTC 5 cut(s) 2, 36, 66, 96, 123
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 26, 237
BspCNI CTCAG 1 cut(s) 266
BspLI GGNNCC 2 cut(s) 21, 297
BspPI GGATC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 295
BspTNI GGTCTC 5 cut(s) 2, 36, 66, 96, 123
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 238
BsrI ACTGG 1 cut(s) 330
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 3 cut(s) 32, 320, 355
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 388, 392
BstDEI CTNAG 2 cut(s) 253, 417
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 5 cut(s) 2, 36, 66, 96, 123
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 343
BstPAI GACNNNNGTC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 124
BstSLI GKGCMC 1 cut(s) 298
BstSNI TACGTA 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 2 cut(s) 26, 237
Cac8I GCNNGC 2 cut(s) 388, 392
Csp6I GTAC 1 cut(s) 33
CviAII CATG 1 cut(s) 340
CviJI RGCY 6 cut(s) 26, 145, 237, 246, 386, 394
CviKI_1 RGCY 6 cut(s) 26, 145, 237, 246, 386, 394
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 2 cut(s) 253, 417
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
EaeI YGGCCR 2 cut(s) 24, 235
Eco105I TACGTA 1 cut(s) 36
Eco31I GGTCTC 5 cut(s) 2, 36, 66, 96, 123
Eco57I CTGAAG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 343
FaiI YATR 4 cut(s) 39, 282, 331, 341
FatI CATG 1 cut(s) 339
FauI CCCGC 1 cut(s) 198
HaeIII GGCC 2 cut(s) 26, 237
HapII CCGG 2 cut(s) 23, 57
Hin1II CATG 1 cut(s) 343
HinfI GANTC 1 cut(s) 53
HpaII CCGG 2 cut(s) 23, 57
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 256, 272
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 323
Hpy99I CGWCG 4 cut(s) 216, 224, 227, 230
HpyAV CCTTC 2 cut(s) 196, 207
HpyCH4III ACNGT 3 cut(s) 32, 320, 355
HpyCH4IV ACGT 7 cut(s) 15, 35, 49, 79, 109, 211, 267
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 2 cut(s) 253, 417
HpySE526I ACGT 7 cut(s) 15, 35, 49, 79, 109, 211, 267
Hsp92II CATG 1 cut(s) 343
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 2 cut(s) 150, 198
LweI GCATC 2 cut(s) 100, 349
MaeII ACGT 7 cut(s) 15, 35, 49, 79, 109, 211, 267
MalI GATC 1 cut(s) 258
MbiI CCGCTC 1 cut(s) 193
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 131
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 1 cut(s) 375
MluNI TGGCCA 1 cut(s) 237
MnlI CCTC 1 cut(s) 270
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 2 cut(s) 23, 57
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 2 cut(s) 21, 297
NspI RCATGY 1 cut(s) 343
PciI ACATGT 1 cut(s) 339
PfeI GAWTC 1 cut(s) 53
Ppu21I YACGTR 1 cut(s) 36
PscI ACATGT 1 cut(s) 339
PshAI GACNNNNGTC 1 cut(s) 108
Psp1406I AACGTT 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 21, 297
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 298
SfaNI GCATC 2 cut(s) 100, 349
SfcI CTRYAG 1 cut(s) 124
SnaBI TACGTA 1 cut(s) 36
Sse9I AATT 1 cut(s) 375
SsiI CCGC 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 3 cut(s) 32, 320, 355
TaiI ACGT 7 cut(s) 18, 38, 52, 82, 112, 214, 270
TasI AATT 1 cut(s) 375
TfiI GAWTC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.