Rh2AG093300

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019918
Physical Location & Seq
Reverse (-)
7818254 .. 7818592
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG093300.1

Sequence Viewer

Length: 339 bp
ATGACCAGCATTGTTCAATTTTTAGCGTCAACCAATTCATCTCTTATGATCAATGCGTACCCTTACTTTGCCTACAAGTCAGACCCTTCCAATGTTCACTTGGACTATGCTCTATTCACTACTAAAACCTCGGTGATTCAAGATGGACCACTCGGCTACTACAACCTGTTGGATGCCATAGTGGATTCGTTTTACACGGCAATGGAGAAAGTAGGCAGCCCTAATGTCACGGTTGTGGTGTCTGAAAGTGGTTGGCCTTCTGCTGGGAGCGGACAGTTCACCACCCCAGAACTTGCAGGGATAACAGGAATTTCATCAAACACATCAGTTCAAGGGTAG

Protein Analysis

112

Amino Acids

11.9

Weight (kDa)

4.23

Isoelectric Point (pI)

24.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 1 - 90 3.8e-29 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019918)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442841
rosa_laevigata RLG00000005967
rosa_multiflora Rmu_co8050374.1_g000001 Rmu_sc0004359.1_g000031
rosa_samantha Rh2AG093300 Rh4AG396300 Rh4DG403100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 270
AciI CCGC 1 cut(s) 270
AcsI RAATTY 1 cut(s) 309
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 3 cut(s) 17, 140, 332
AleI CACNNNNGTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 216
ApoI RAATTY 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 145, 271
AvaII GGWCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 228
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 213
BclI TGATCA 1 cut(s) 48
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 228
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 263
BsnI GGCC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 256
BsrBI CCGCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 232, 276
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 256
BtsCI GGATG 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 58
CviJI RGCY 3 cut(s) 156, 219, 256
CviKI_1 RGCY 3 cut(s) 156, 219, 256
CviQI GTAC 1 cut(s) 58
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 146
FaiI YATR 3 cut(s) 47, 108, 179
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 217
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 217
GluI GCNGC 1 cut(s) 217
GsaI CCCAGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 256
HgaI GACGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 136, 185
HphI GGTGA 2 cut(s) 145, 271
Hpy166II GTNNAC 3 cut(s) 30, 97, 279
Hpy188I TCNGA 2 cut(s) 82, 244
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 3 cut(s) 30, 97, 279
HpyAV CCTTC 2 cut(s) 96, 267
HpyCH4III ACNGT 2 cut(s) 232, 276
HpyCH4V TGCA 1 cut(s) 296
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 6 cut(s) 19, 179, 249, 282, 291, 300
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 50
MbiI CCGCTC 1 cut(s) 270
MboI GATC 1 cut(s) 48
MluCI AATT 3 cut(s) 17, 34, 309
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 1 cut(s) 139
MslI CAYNNNNRTG 2 cut(s) 200, 233
NdeII GATC 1 cut(s) 48
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 226
OliI CACNNNNGTG 1 cut(s) 233
PfeI GAWTC 2 cut(s) 136, 185
PkrI GCNGC 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 146
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 2 cut(s) 200, 233
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 146
SetI ASST 2 cut(s) 131, 168
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 200, 233
Sse9I AATT 3 cut(s) 17, 34, 309
SsiI CCGC 1 cut(s) 270
TaaI ACNGT 2 cut(s) 232, 276
TasI AATT 3 cut(s) 17, 34, 309
TfiI GAWTC 2 cut(s) 136, 185
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 27, 303
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 1 cut(s) 309
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.