Rmu_co8050374.1_g000001

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8050374.1
OG0019918
Physical Location & Seq
Forward (+)
1 .. 530
530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8050374.1_g000001.1.cds

Sequence Viewer

Length: 286 bp
agacaaagtgtctttgaagtacatctcagttggtaatgaggctattcctggaccctcggcgcaatatgtttatccactggtgaagtccggggcaccttaccctgtcgttcaagacagtttactggcatattacgctatggttgatgctttctactctgcaattgagaaagctggcaagccagaagttgatagcatggtatctaagtctggttggccttcagctgggaacggaaatcacaccactctcaaccttgacaacatacaaatgagaatttggttgatctga

Protein Analysis

94

Amino Acids

10.21

Weight (kDa)

5.63

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019918)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442841
rosa_laevigata RLG00000005967
rosa_multiflora Rmu_co8050374.1_g000001 Rmu_sc0004359.1_g000031
rosa_samantha Rh2AG093300 Rh4AG396300 Rh4DG403100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 202
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 17, 111
AhdI GACNNNNNGTC 1 cut(s) 8
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 171, 222
AluI AGCT 2 cut(s) 171, 222
AoxI GGCC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 51
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 95
BanI GGYRCC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 49
BcnI CCSGG 1 cut(s) 89
Bme1390I CCNGG 2 cut(s) 49, 89
Bme18I GGWCC 1 cut(s) 51
BmeRI GACNNNNNGTC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 53, 94
BmrFI CCNGG 2 cut(s) 49, 89
BmsI GCATC 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 55, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 2 cut(s) 82, 127
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 55, 88
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 2 cut(s) 82, 127
BseSI GKGCMC 1 cut(s) 95
BseYI CCCAGC 1 cut(s) 222
BshFI GGCC 1 cut(s) 215
BshNI GGYRCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 222
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 280
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 53, 94
BspT107I GGYRCC 1 cut(s) 92
BsrI ACTGG 2 cut(s) 82, 127
BssECI CCNNGG 2 cut(s) 55, 88
BssMI GATC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 173, 177
BstDEI CTNAG 2 cut(s) 26, 202
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 47, 87
BstSLI GKGCMC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 173, 177
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 20
CviAII CATG 1 cut(s) 194
CviJI RGCY 5 cut(s) 42, 171, 179, 215, 222
CviKI_1 RGCY 5 cut(s) 42, 171, 179, 215, 222
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 2 cut(s) 26, 202
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 8
Eam1105I GACNNNNNGTC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 47
FaeI CATG 1 cut(s) 197
FaiI YATR 5 cut(s) 67, 128, 138, 195, 261
FatI CATG 1 cut(s) 193
GlaI GCGC 1 cut(s) 61
GsaI CCCAGC 1 cut(s) 226
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 88
HhaI GCGC 1 cut(s) 62
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 1 cut(s) 111
Hpy8I GTNNAC 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 2 cut(s) 26, 202
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 280
LweI GCATC 1 cut(s) 134
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MfeI CAATTG 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 2 cut(s) 160, 271
MnlI CCTC 2 cut(s) 32, 65
MslI CAYNNNNRTG 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 222
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 2 cut(s) 49, 89
MunI CAATTG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 89
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 2 cut(s) 53, 94
NmeAIII GCCGAG 1 cut(s) 36
PfoI TCCNGGA 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 47
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 53, 94
PspPI GGNCC 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 222
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 264
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 2 cut(s) 49, 89
SduI GDGCHC 1 cut(s) 95
SetI ASST 4 cut(s) 98, 173, 224, 253
SfaNI GCATC 1 cut(s) 134
SinI GGWCC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 2 cut(s) 160, 271
StyD4I CCNGG 2 cut(s) 47, 87
TaaI ACNGT 1 cut(s) 117
TasI AATT 2 cut(s) 160, 271
TatI WGTACW 1 cut(s) 19
TscAI CASTG 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.