RLG00000006099

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
4350438 .. 4351885
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006099

Sequence Viewer

Length: 1272 bp
ATGGAGTCGACGTCGACACCCAAGCTTCTTCTGAAGCTCACCATCTTCATCTTCATCTTCATCTCTGAAGCTTTGCCCACCAAGTCAGGCTACCTCACAGTCAACTCCACCACAGGCTCTTCTATTTTCTACACCAATTATGAAGCTCAGAGCCTCACTTTCCCTGACCTCTCGCAAACCCCACTTATAATTTGGCTCCAGGGTGGGCCCGGATGCTCCTTCTTGTTTGGTAACTTCATGGAGATCGGGCCTTGGCATGTAAACTTAAACCATCATCATCGTGATCTTGATCATCAACCCTTTGTGCTTGAACCCAACCCCGGTTCTTGGAACCGGATTTTTGGACTTCTTTTCCTTGATAATCCAATAGGATCCGGGTTCAGCATCGCCTCGAGCAGCGAAGAAATCCCAAGAGACCAAATTTCGGTAGCTAAACACCTATACATTGCGATTATAAAGTTTATTGAACTTGATCCAATATTGTTTAGCTCTCGTCCGCTATATATAGCGGGCGAGAGCTATGCTGGCAAGTACGTGCCAGCAATAGGGTACTATATACTCAAGAAGAATGAAGAGTCCAATCATTCGGTTAATTTAGCTGGCGTAGCTATAGGAAATGGTTTGATAGACCCGGAGACTCAGGTGGGCACTCACGCAGACAATGCTTACTTTTCGGGCTTGATCAATGAGAAACAGAGGAGGGAGATGGAGATGTATCAGAACGAGGCAATCAGGCTAGCCAGATTAAAGCGATGGAGAGATGCAACCGATGCAAGGTACCGAGTTGTGGATATGCTGATTGACATGACAGGATTAGCTACATTGTTTGACTACTCCAAGAAAGCGCCTTACCACAAGACTCAATGGGTCACTGACTTTTTACATGATGAAAGGGTCAAGAGAATTATGAGTGTGGAGGAGTCCGCAGTGTTTAGAAATTGTAGCCATGTGGTGCAAGTTGCTTTGTATGATGATAACATGAAGCGTGTGAAGTACATGGTGGACTTGTTGGTGAAGAGGAGCAAGACATTGCAATGGGAGGAGATTCAGAGATTTTTAGCGGCGGGGAGGAGGGTTTGGAGAGGGAGAGGGGATGAGCTTGCAGGGTATGTGCAGAAATGGAAGAGTTTGAGCAATGTTGTGGTTTCAAGAGCAGGGCATCTTGTGCCGGCTGACCAGCCATTGAATTCTCAGGCAATGATCGAAGGCTGGATTTTGGAAACAGGGTTGTTTAGCAACGATGAGCAATTGTTCCGAGTTCTAGAAAGTTAA

Protein Analysis

424

Amino Acids

48.21

Weight (kDa)

6.47

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 26 - 340 9.2e-70 Serine carboxypeptidase
Peptidase_S10 PF00450 342 - 405 4.8e-08 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32490
rosa_chinensis RchiOBHm_Chr4g0441351
rosa_laevigata RLG00000006099
rosa_multiflora Rmu_co8458681.1_g000001 Rmu_sc0005516.1_g000007
rosa_roxburghii Rroxscaffold_5G00382240
rosa_rugosa Rorug04G0332500
rosa_samantha Rh4AG384600 Rh4BG398700 Rh4CG413800
rosa_wichuraiana Rw4G033200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 188, 455
AatII GACGTC 1 cut(s) 14
Acc65I GGTACC 1 cut(s) 777
AccB1I GGYRCC 1 cut(s) 777
AccI GTMKAC 2 cut(s) 8, 14
AciI CCGC 5 cut(s) 497, 509, 924, 1061, 1064
AclWI GGATC 3 cut(s) 366, 379, 467
AcsI RAATTY 2 cut(s) 420, 1186
AcuI CTGAAG 2 cut(s) 53, 87
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 4 cut(s) 533, 551, 779, 995
AfiI CCNNNNNNNGG 6 cut(s) 320, 327, 424, 545, 774, 787
AgsI TTSAA 4 cut(s) 311, 467, 1149, 1186
AjnI CCWGG 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 408, 629
AlwI GGATC 3 cut(s) 366, 379, 467
Ama87I CYCGRG 1 cut(s) 391
AoxI GGCC 2 cut(s) 206, 248
ApaI GGGCCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 396
ApoI RAATTY 2 cut(s) 420, 1186
Asp718I GGTACC 1 cut(s) 777
AspLEI GCGC 1 cut(s) 847
AspS9I GGNCC 3 cut(s) 206, 207, 248
AsuC2I CCSGG 4 cut(s) 210, 321, 376, 632
AsuHPI GGTGA 2 cut(s) 31, 1024
AsuNHI GCTAGC 1 cut(s) 736
AvaI CYCGRG 1 cut(s) 391
BaeGI GKGCMC 2 cut(s) 210, 650
BamHI GGATCC 1 cut(s) 371
BanI GGYRCC 1 cut(s) 777
BanII GRGCYC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 408
BccI CCATC 4 cut(s) 50, 279, 700, 747
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciT130I CCWGG 1 cut(s) 200
BclI TGATCA 2 cut(s) 289, 681
BcnI CCSGG 4 cut(s) 210, 321, 376, 632
BcoDI GTCTC 2 cut(s) 408, 629
BfaI CTAG 2 cut(s) 737, 1262
BfmI CTRYAG 1 cut(s) 609
BfoI RGCGCY 1 cut(s) 848
BisI GCNGC 2 cut(s) 397, 1062
BlsI GCNGC 2 cut(s) 398, 1063
Bme1390I CCNGG 5 cut(s) 200, 210, 321, 376, 632
BmeT110I CYCGRG 1 cut(s) 391
BmgT120I GGNCC 3 cut(s) 206, 207, 248
BmiI GGNNCC 5 cut(s) 197, 208, 332, 373, 779
BmrFI CCNGG 5 cut(s) 200, 210, 321, 376, 632
BmsI GCATC 5 cut(s) 203, 393, 751, 760, 1168
BmtI GCTAGC 1 cut(s) 740
BpmI CTGGAG 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 4 cut(s) 210, 321, 376, 632
BsaAI YACGTR 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 408
BsaJI CCNNGG 3 cut(s) 199, 251, 319
BsaWI WCCGGW 1 cut(s) 333
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 6 cut(s) 320, 327, 424, 545, 774, 787
Bse118I RCCGGY 1 cut(s) 1168
Bse3DI GCAATG 5 cut(s) 444, 1028, 1040, 1141, 1203
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 199, 251, 319
BseGI GGATG 2 cut(s) 218, 1099
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 6 cut(s) 320, 327, 424, 545, 774, 787
BseMI GCAATG 5 cut(s) 444, 1028, 1040, 1141, 1203
BseMII CTCAG 3 cut(s) 161, 653, 1205
BseRI GAGGAG 5 cut(s) 712, 932, 1033, 1055, 1084
BseSI GKGCMC 2 cut(s) 210, 650
BseXI GCAGC 1 cut(s) 408
BsgI GTGCAG 1 cut(s) 1133
BshFI GGCC 2 cut(s) 208, 250
BshNI GGYRCC 1 cut(s) 777
BsiHKCI CYCGRG 1 cut(s) 391
BsiSI CCGG 6 cut(s) 210, 321, 334, 375, 632, 1169
BslI CCNNNNNNNGG 6 cut(s) 320, 327, 424, 545, 774, 787
BsmAI GTCTC 2 cut(s) 408, 629
BsnI GGCC 2 cut(s) 208, 250
Bso31I GGTCTC 1 cut(s) 408
BsoBI CYCGRG 1 cut(s) 391
Bsp120I GGGCCC 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 210, 650
Bsp143I GATC 7 cut(s) 243, 283, 289, 371, 472, 681, 1200
BspACI CCGC 5 cut(s) 497, 509, 924, 1061, 1064
BspANI GGCC 2 cut(s) 208, 250
BspCNI CTCAG 3 cut(s) 160, 652, 1204
BspLI GGNNCC 5 cut(s) 197, 208, 332, 373, 779
BspOI GCTAGC 1 cut(s) 740
BspPI GGATC 3 cut(s) 366, 379, 467
BspQI GCTCTTC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 777
BspTNI GGTCTC 1 cut(s) 408
BsrDI GCAATG 5 cut(s) 444, 1028, 1040, 1141, 1203
BsrFI RCCGGY 1 cut(s) 1168
BssAI RCCGGY 1 cut(s) 1168
BssECI CCNNGG 3 cut(s) 199, 251, 319
BssMI GATC 7 cut(s) 243, 283, 289, 371, 472, 681, 1200
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 4 cut(s) 124, 567, 1010, 1118
BstACI GRCGYC 1 cut(s) 11
BstAPI GCANNNNNTGC 3 cut(s) 662, 770, 1165
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 7 cut(s) 511, 526, 540, 601, 738, 1101, 1170
BstDEI CTNAG 3 cut(s) 147, 639, 1191
BstF5I GGATG 2 cut(s) 218, 1099
BstH2I RGCGCY 1 cut(s) 848
BstHHI GCGC 1 cut(s) 847
BstKTI GATC 7 cut(s) 246, 286, 292, 374, 475, 684, 1203
BstMAI GTCTC 2 cut(s) 408, 629
BstMBI GATC 7 cut(s) 243, 283, 289, 371, 472, 681, 1200
BstMWI GCNNNNNNNGC 5 cut(s) 525, 605, 662, 770, 1165
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 5 cut(s) 198, 208, 319, 374, 630
BstSFI CTRYAG 1 cut(s) 609
BstSLI GKGCMC 2 cut(s) 210, 650
BstV1I GCAGC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BsuRI GGCC 2 cut(s) 208, 250
BtgZI GCGATG 2 cut(s) 370, 766
BtsCI GGATG 2 cut(s) 218, 1099
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 2 cut(s) 870, 933
Cac8I GCNNGC 7 cut(s) 511, 526, 540, 601, 738, 1101, 1170
CfoI GCGC 1 cut(s) 847
Cfr10I RCCGGY 1 cut(s) 1168
Cfr13I GGNCC 3 cut(s) 206, 207, 248
Csp6I GTAC 4 cut(s) 532, 550, 778, 994
CviAII CATG 7 cut(s) 238, 257, 805, 884, 947, 979, 997
CviQI GTAC 4 cut(s) 532, 550, 778, 994
DdeI CTNAG 3 cut(s) 147, 639, 1191
DpnI GATC 7 cut(s) 245, 285, 291, 373, 474, 683, 1202
DpnII GATC 7 cut(s) 243, 283, 289, 371, 472, 681, 1200
Eam1104I CTCTTC 4 cut(s) 124, 567, 1010, 1118
EarI CTCTTC 4 cut(s) 124, 567, 1010, 1118
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 408
Eco57I CTGAAG 2 cut(s) 53, 87
Eco88I CYCGRG 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 1186
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 7 cut(s) 241, 260, 808, 887, 950, 982, 1000
FatI CATG 7 cut(s) 237, 256, 804, 883, 946, 978, 996
FauI CCCGC 2 cut(s) 502, 1057
FbaI TGATCA 2 cut(s) 289, 681
FblI GTMKAC 2 cut(s) 8, 14
Fnu4HI GCNGC 2 cut(s) 397, 1062
FokI GGATG 2 cut(s) 225, 1106
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 397, 1062
FspBI CTAG 2 cut(s) 737, 1262
GlaI GCGC 1 cut(s) 846
GluI GCNGC 2 cut(s) 397, 1062
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 848
HaeIII GGCC 2 cut(s) 208, 250
HapII CCGG 6 cut(s) 210, 321, 334, 375, 632, 1169
HhaI GCGC 1 cut(s) 847
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 7 cut(s) 241, 260, 808, 887, 950, 982, 1000
Hin6I GCGC 1 cut(s) 845
HinP1I GCGC 1 cut(s) 845
HincII GTYRAC 3 cut(s) 9, 15, 103
HindII GTYRAC 3 cut(s) 9, 15, 103
HindIII AAGCTT 2 cut(s) 23, 69
HinfI GANTC 6 cut(s) 5, 575, 637, 859, 920, 1045
HpaII CCGG 6 cut(s) 210, 321, 334, 375, 632, 1169
HphI GGTGA 2 cut(s) 31, 1024
Hpy166II GTNNAC 5 cut(s) 9, 15, 103, 262, 1003
Hpy188I TCNGA 6 cut(s) 33, 67, 150, 720, 1050, 1256
Hpy188III TCNNGA 6 cut(s) 281, 287, 562, 898, 1149, 1262
Hpy8I GTNNAC 5 cut(s) 9, 15, 103, 262, 1003
Hpy99I CGWCG 2 cut(s) 13, 16
HpyAV CCTTC 2 cut(s) 229, 1199
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 11, 534
HpyCH4V TGCA 6 cut(s) 764, 773, 955, 1033, 1103, 1114
HpyF10VI GCNNNNNNNGC 5 cut(s) 525, 605, 662, 770, 1165
HpyF3I CTNAG 3 cut(s) 147, 639, 1191
HpySE526I ACGT 2 cut(s) 11, 534
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 7 cut(s) 241, 260, 808, 887, 950, 982, 1000
HspAI GCGC 1 cut(s) 845
KpnI GGTACC 1 cut(s) 781
KroI GCCGGC 1 cut(s) 1168
KroNI GCCGGC 1 cut(s) 1170
Ksp22I TGATCA 2 cut(s) 289, 681
Kzo9I GATC 7 cut(s) 243, 283, 289, 371, 472, 681, 1200
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 3 cut(s) 201, 221, 1020
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 5 cut(s) 203, 393, 751, 760, 1168
MaeI CTAG 2 cut(s) 737, 1262
MaeII ACGT 2 cut(s) 11, 534
MaeIII GTNAC 2 cut(s) 230, 868
MalI GATC 7 cut(s) 245, 285, 291, 373, 474, 683, 1202
MboI GATC 7 cut(s) 243, 283, 289, 371, 472, 681, 1200
MfeI CAATTG 1 cut(s) 1247
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 2 cut(s) 210, 650
MluCI AATT 8 cut(s) 136, 189, 420, 592, 903, 937, 1186, 1247
MlyI GAGTC 5 cut(s) 14, 584, 631, 853, 929
MroNI GCCGGC 1 cut(s) 1168
MseI TTAA 4 cut(s) 266, 591, 746, 1270
MslI CAYNNNNRTG 2 cut(s) 279, 1033
MspI CCGG 6 cut(s) 210, 321, 334, 375, 632, 1169
MspR9I CCNGG 5 cut(s) 200, 210, 321, 376, 632
MunI CAATTG 1 cut(s) 1247
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 5 cut(s) 525, 605, 662, 770, 1165
NaeI GCCGGC 1 cut(s) 1170
NciI CCSGG 4 cut(s) 210, 321, 376, 632
NdeII GATC 7 cut(s) 243, 283, 289, 371, 472, 681, 1200
NgoMIV GCCGGC 1 cut(s) 1168
NheI GCTAGC 1 cut(s) 736
NlaIII CATG 7 cut(s) 241, 260, 808, 887, 950, 982, 1000
NlaIV GGNNCC 5 cut(s) 197, 208, 332, 373, 779
NmuCI GTSAC 1 cut(s) 868
NspI RCATGY 1 cut(s) 260
PaeR7I CTCGAG 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 124
PdiI GCCGGC 1 cut(s) 1170
PfeI GAWTC 1 cut(s) 1045
PkrI GCNGC 2 cut(s) 398, 1063
PleI GAGTC 5 cut(s) 13, 583, 631, 853, 928
PpsI GAGTC 5 cut(s) 13, 583, 631, 853, 928
Ppu21I YACGTR 1 cut(s) 535
PsiI TTATAA 2 cut(s) 188, 455
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 5 cut(s) 197, 208, 332, 373, 779
PspOMI GGGCCC 1 cut(s) 206
PspPI GGNCC 3 cut(s) 206, 207, 248
PspXI VCTCGAGB 1 cut(s) 391
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 4 cut(s) 533, 551, 779, 995
RsaNI GTAC 4 cut(s) 532, 550, 778, 994
RseI CAYNNNNRTG 2 cut(s) 279, 1033
SalI GTCGAC 2 cut(s) 7, 13
SapI GCTCTTC 1 cut(s) 124
SaqAI TTAA 4 cut(s) 266, 591, 746, 1270
SatI GCNGC 2 cut(s) 397, 1062
Sau3AI GATC 7 cut(s) 243, 283, 289, 371, 472, 681, 1200
Sau96I GGNCC 3 cut(s) 206, 207, 248
SchI GAGTC 5 cut(s) 14, 584, 631, 853, 929
ScrFI CCNGG 5 cut(s) 200, 210, 321, 376, 632
SduI GDGCHC 2 cut(s) 210, 650
SfaNI GCATC 5 cut(s) 203, 393, 751, 760, 1168
SfcI CTRYAG 1 cut(s) 609
Sfr274I CTCGAG 1 cut(s) 391
SlaI CTCGAG 1 cut(s) 391
SmiMI CAYNNNNRTG 2 cut(s) 279, 1033
SmlI CTYRAG 2 cut(s) 391, 560
SmoI CTYRAG 2 cut(s) 391, 560
Sse9I AATT 8 cut(s) 136, 189, 420, 592, 903, 937, 1186, 1247
SsiI CCGC 5 cut(s) 497, 509, 924, 1061, 1064
SspI AATATT 1 cut(s) 480
SspMI CTAG 2 cut(s) 737, 1262
StyD4I CCNGG 5 cut(s) 198, 208, 319, 374, 630
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 14, 537
TaqI TCGA 4 cut(s) 8, 14, 392, 1203
TasI AATT 8 cut(s) 136, 189, 420, 592, 903, 937, 1186, 1247
TatI WGTACW 1 cut(s) 993
TauI GCSGC 1 cut(s) 1064
TfiI GAWTC 1 cut(s) 1045
Tru1I TTAA 4 cut(s) 266, 591, 746, 1270
Tru9I TTAA 4 cut(s) 266, 591, 746, 1270
TscAI CASTG 2 cut(s) 877, 933
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 8 cut(s) 37, 43, 49, 156, 226, 585, 903, 995
TspRI CASTG 2 cut(s) 877, 933
XapI RAATTY 2 cut(s) 420, 1186
XbaI TCTAGA 1 cut(s) 1261
XceI RCATGY 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
XhoI CTCGAG 1 cut(s) 391
XmiI GTMKAC 2 cut(s) 8, 14
XspI CTAG 2 cut(s) 737, 1262
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.