Rmu_sc0005516.1_g000007

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005516.1
Physical Location & Seq
Forward (+)
30899 .. 32326
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005516.1_g000007.1.cds

Sequence Viewer

Length: 1428 bp
atggagtcaacgtggacacccaagcttcttctgaagctcaccttcttcatcttcatctctgttttcatattgcttcaattctttcccatctcctatcttcatcgagctccatccttatggccaccctccaagttctcattgttcactgctccaatctctctgtttcccaaggaagctttgcccaccaagtcaggctacctcacagtcaactccaccacaggctcttctattttctacacctattatgaagctcagagcctcactttccccgacctctcgcaaaccccacttatcatttggctccagggtgggcccggatgctcctccttgtttggtaacttcatggagatcgggccttggtatgtaaacttaaaccatcatcatcgtgatcttgataatcaaccatttgtgcttgaacccaaccccggttcttggaaccggatttttggacttcttttccttgataatccaataggatccgggttcagcatcgcctcgagcagcgaagaaatcccaagagaccaattttcggtagctaaacacctatacattgcgattacaaagtttattgaacttgatccaatattgtttagctctcgcccgctatatatagcaggcgagagctatgctggcaagtacgtgccagcaattgggtactatatactcaagaagaatgaagagtccaatcatttggttaatttagctggcgtagctataggaaatggtttgatagacccggagactcaggtgggcactcatgcagacaatgcttacttttcgggcttgatcaatgagaaacagaggagggagatggagatgtatcagaacgaggcaatcaggctagccagattgaagcgatggagagatgcgaccgatgcaaggtaccgagttgtggatatgctgattgacatgacaggattagccacattgtttgactactccaagaaagcgccttaccacaagactcaatgggtcactgactttttacacgatgaaagggtgaagagaattatgagtgtggaggagcccgcagtgtttagaaattgtagccatgtggtgcaagttgctttgtatgatgataacatgaagagtgtgaagtacatggtggagttgttggtgaagaggagcaaggtgttgttgtatcaagggcagtttgatttgtgggatggggtgttttcgaccgcggcgtgggtgaagacattgcaatgggaggagattcagagatttttagcggcggggaggagggtttggagagggagaggggatgagcttgcagggtatgtgcagaaatggaagagtttgagcaatgttgttgtttcaagagcagggcatcttgtgccggctgaccagccattgaattctcaggcaatgatcgaaggctggattttggaaacagggttgtttagcgacgatgagcaattgttctga

Protein Analysis

475

Amino Acids

54.31

Weight (kDa)

6.43

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018030)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32490
rosa_chinensis RchiOBHm_Chr4g0441351
rosa_laevigata RLG00000006099
rosa_multiflora Rmu_co8458681.1_g000001 Rmu_sc0005516.1_g000007
rosa_roxburghii Rroxscaffold_5G00382240
rosa_rugosa Rorug04G0332500
rosa_samantha Rh4AG384600 Rh4BG398700 Rh4CG413800
rosa_wichuraiana Rw4G033200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 882
AccB1I GGYRCC 1 cut(s) 882
AccB7I CCANNNNNTGG 1 cut(s) 650
AccII CGCG 1 cut(s) 1184
AciI CCGC 6 cut(s) 602, 1029, 1182, 1184, 1232, 1235
AclWI GGATC 3 cut(s) 471, 484, 572
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 1 cut(s) 1357
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 4 cut(s) 638, 656, 884, 1100
AfiI CCNNNNNNNGG 7 cut(s) 425, 432, 529, 650, 879, 892, 1188
AgsI TTSAA 6 cut(s) 77, 416, 572, 853, 1320, 1357
AjnI CCWGG 1 cut(s) 303
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 2 cut(s) 513, 734
AlwI GGATC 3 cut(s) 471, 484, 572
Ama87I CYCGRG 1 cut(s) 496
AoxI GGCC 3 cut(s) 119, 311, 353
ApaI GGGCCC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 501
ApoI RAATTY 1 cut(s) 1357
Asp718I GGTACC 1 cut(s) 882
AspLEI GCGC 1 cut(s) 952
AspS9I GGNCC 3 cut(s) 311, 312, 353
AsuC2I CCSGG 4 cut(s) 315, 426, 481, 737
AsuHPI GGTGA 4 cut(s) 31, 1012, 1129, 1204
AsuNHI GCTAGC 1 cut(s) 841
AvaI CYCGRG 1 cut(s) 496
BaeGI GKGCMC 2 cut(s) 315, 755
BalI TGGCCA 1 cut(s) 121
BamHI GGATCC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 882
BanII GRGCYC 3 cut(s) 109, 315, 1029
BbsI GAAGAC 1 cut(s) 1202
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 513
BccI CCATC 6 cut(s) 95, 118, 384, 805, 852, 1160
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 786
BcnI CCSGG 4 cut(s) 315, 426, 481, 737
BcoDI GTCTC 2 cut(s) 513, 734
BfaI CTAG 1 cut(s) 842
BfmI CTRYAG 1 cut(s) 714
BfoI RGCGCY 1 cut(s) 953
BisI GCNGC 3 cut(s) 502, 1185, 1233
BlsI GCNGC 3 cut(s) 503, 1186, 1234
Bme1390I CCNGG 5 cut(s) 305, 315, 426, 481, 737
BmeT110I CYCGRG 1 cut(s) 496
BmgT120I GGNCC 3 cut(s) 311, 312, 353
BmiI GGNNCC 6 cut(s) 302, 313, 437, 478, 884, 1026
BmrFI CCNGG 5 cut(s) 305, 315, 426, 481, 737
BmsI GCATC 5 cut(s) 308, 498, 856, 865, 1339
BmtI GCTAGC 1 cut(s) 845
BpiI GAAGAC 1 cut(s) 1202
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 4 cut(s) 315, 426, 481, 737
BsaAI YACGTR 1 cut(s) 640
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 5 cut(s) 168, 304, 356, 424, 1182
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 7 cut(s) 425, 432, 529, 650, 879, 892, 1188
Bse118I RCCGGY 1 cut(s) 1339
Bse3DI GCAATG 5 cut(s) 549, 1199, 1211, 1312, 1374
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 5 cut(s) 168, 304, 356, 424, 1182
BseGI GGATG 4 cut(s) 110, 323, 1171, 1270
BseLI CCNNNNNNNGG 7 cut(s) 425, 432, 529, 650, 879, 892, 1188
BseMI GCAATG 5 cut(s) 549, 1199, 1211, 1312, 1374
BseMII CTCAG 3 cut(s) 266, 758, 1376
BseRI GAGGAG 6 cut(s) 313, 817, 1037, 1138, 1226, 1255
BseSI GKGCMC 2 cut(s) 315, 755
BseXI GCAGC 1 cut(s) 513
BsgI GTGCAG 1 cut(s) 1304
Bsh1236I CGCG 1 cut(s) 1184
Bsh1285I CGRYCG 2 cut(s) 873, 1182
BshFI GGCC 3 cut(s) 121, 313, 355
BshNI GGYRCC 1 cut(s) 882
BsiEI CGRYCG 2 cut(s) 873, 1182
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 496
BsiSI CCGG 6 cut(s) 315, 426, 439, 480, 737, 1340
BslI CCNNNNNNNGG 7 cut(s) 425, 432, 529, 650, 879, 892, 1188
BsmAI GTCTC 2 cut(s) 513, 734
BsnI GGCC 3 cut(s) 121, 313, 355
Bso31I GGTCTC 1 cut(s) 513
BsoBI CYCGRG 1 cut(s) 496
Bsp120I GGGCCC 1 cut(s) 311
Bsp1286I GDGCHC 4 cut(s) 109, 315, 755, 1029
Bsp143I GATC 6 cut(s) 348, 388, 476, 577, 786, 1371
BspACI CCGC 6 cut(s) 602, 1029, 1182, 1184, 1232, 1235
BspANI GGCC 3 cut(s) 121, 313, 355
BspCNI CTCAG 3 cut(s) 265, 757, 1375
BspFNI CGCG 1 cut(s) 1184
BspLI GGNNCC 6 cut(s) 302, 313, 437, 478, 884, 1026
BspOI GCTAGC 1 cut(s) 845
BspPI GGATC 3 cut(s) 471, 484, 572
BspQI GCTCTTC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 882
BspTNI GGTCTC 1 cut(s) 513
BsrDI GCAATG 5 cut(s) 549, 1199, 1211, 1312, 1374
BsrFI RCCGGY 1 cut(s) 1339
BssAI RCCGGY 1 cut(s) 1339
BssECI CCNNGG 5 cut(s) 168, 304, 356, 424, 1182
BssMI GATC 6 cut(s) 348, 388, 476, 577, 786, 1371
BssT1I CCWWGG 2 cut(s) 168, 356
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 6 cut(s) 229, 672, 998, 1082, 1115, 1289
BstAPI GCANNNNNTGC 2 cut(s) 767, 1336
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 9 cut(s) 602, 616, 631, 645, 706, 843, 1029, 1272, 1341
BstDEI CTNAG 3 cut(s) 252, 744, 1362
BstDSI CCRYGG 1 cut(s) 1182
BstF5I GGATG 4 cut(s) 110, 323, 1171, 1270
BstFNI CGCG 1 cut(s) 1184
BstH2I RGCGCY 1 cut(s) 953
BstHHI GCGC 1 cut(s) 952
BstKTI GATC 6 cut(s) 351, 391, 479, 580, 789, 1374
BstMAI GTCTC 2 cut(s) 513, 734
BstMBI GATC 6 cut(s) 348, 388, 476, 577, 786, 1371
BstMCI CGRYCG 2 cut(s) 873, 1182
BstMWI GCNNNNNNNGC 5 cut(s) 630, 710, 767, 875, 1336
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 5 cut(s) 303, 313, 424, 479, 735
BstSFI CTRYAG 1 cut(s) 714
BstSLI GKGCMC 2 cut(s) 315, 755
BstUI CGCG 1 cut(s) 1184
BstV1I GCAGC 1 cut(s) 513
BstV2I GAAGAC 1 cut(s) 1202
BstX2I RGATCY 1 cut(s) 476
BstXI CCANNNNNNTGG 2 cut(s) 117, 691
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 3 cut(s) 121, 313, 355
BtgI CCRYGG 1 cut(s) 1182
BtgZI GCGATG 2 cut(s) 475, 871
BtsCI GGATG 4 cut(s) 110, 323, 1171, 1270
BtsI GCAGTG 2 cut(s) 144, 1038
BtsIMutI CAGTG 3 cut(s) 144, 975, 1038
Cac8I GCNNGC 9 cut(s) 602, 616, 631, 645, 706, 843, 1029, 1272, 1341
CfoI GCGC 1 cut(s) 952
Cfr10I RCCGGY 1 cut(s) 1339
Cfr13I GGNCC 3 cut(s) 311, 312, 353
Cfr42I CCGCGG 1 cut(s) 1185
Csp6I GTAC 4 cut(s) 637, 655, 883, 1099
CspCI CAANNNNNGTGG 2 cut(s) 913, 948
CviAII CATG 6 cut(s) 343, 758, 910, 1052, 1084, 1102
CviQI GTAC 4 cut(s) 637, 655, 883, 1099
DdeI CTNAG 3 cut(s) 252, 744, 1362
DpnI GATC 6 cut(s) 350, 390, 478, 579, 788, 1373
DpnII GATC 6 cut(s) 348, 388, 476, 577, 786, 1371
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 6 cut(s) 229, 672, 998, 1082, 1115, 1289
EarI CTCTTC 6 cut(s) 229, 672, 998, 1082, 1115, 1289
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 168, 356
Eco24I GRGCYC 3 cut(s) 109, 315, 1029
Eco31I GGTCTC 1 cut(s) 513
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 496
EcoICRI GAGCTC 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 1357
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 2 cut(s) 168, 356
EcoT38I GRGCYC 3 cut(s) 109, 315, 1029
ErhI CCWWGG 2 cut(s) 168, 356
FaeI CATG 6 cut(s) 346, 761, 913, 1055, 1087, 1105
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 6 cut(s) 342, 757, 909, 1051, 1083, 1101
FauI CCCGC 3 cut(s) 609, 1036, 1228
FbaI TGATCA 1 cut(s) 786
Fnu4HI GCNGC 3 cut(s) 502, 1185, 1233
FokI GGATG 4 cut(s) 97, 330, 1178, 1277
FriOI GRGCYC 3 cut(s) 109, 315, 1029
Fsp4HI GCNGC 3 cut(s) 502, 1185, 1233
FspBI CTAG 1 cut(s) 842
GlaI GCGC 1 cut(s) 951
GluI GCNGC 3 cut(s) 502, 1185, 1233
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 953
HaeIII GGCC 3 cut(s) 121, 313, 355
HapII CCGG 6 cut(s) 315, 426, 439, 480, 737, 1340
HhaI GCGC 1 cut(s) 952
Hin1II CATG 6 cut(s) 346, 761, 913, 1055, 1087, 1105
Hin6I GCGC 1 cut(s) 950
HinP1I GCGC 1 cut(s) 950
HincII GTYRAC 2 cut(s) 9, 208
HindII GTYRAC 2 cut(s) 9, 208
HindIII AAGCTT 2 cut(s) 23, 174
HinfI GANTC 5 cut(s) 5, 680, 742, 964, 1216
HpaII CCGG 6 cut(s) 315, 426, 439, 480, 737, 1340
HphI GGTGA 4 cut(s) 31, 1012, 1129, 1204
Hpy166II GTNNAC 5 cut(s) 9, 15, 144, 208, 367
Hpy188I TCNGA 5 cut(s) 33, 255, 825, 1221, 1427
Hpy188III TCNNGA 4 cut(s) 386, 392, 667, 1320
Hpy8I GTNNAC 5 cut(s) 9, 15, 144, 208, 367
Hpy99I CGWCG 1 cut(s) 1412
HpyAV CCTTC 2 cut(s) 52, 1370
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 2 cut(s) 11, 639
HpyCH4V TGCA 6 cut(s) 761, 878, 1060, 1204, 1274, 1285
HpyF10VI GCNNNNNNNGC 5 cut(s) 630, 710, 767, 875, 1336
HpyF3I CTNAG 3 cut(s) 252, 744, 1362
HpySE526I ACGT 2 cut(s) 11, 639
Hsp92II CATG 6 cut(s) 346, 761, 913, 1055, 1087, 1105
HspAI GCGC 1 cut(s) 950
KpnI GGTACC 1 cut(s) 886
KroI GCCGGC 1 cut(s) 1339
KroNI GCCGGC 1 cut(s) 1341
Ksp22I TGATCA 1 cut(s) 786
KspI CCGCGG 1 cut(s) 1185
Kzo9I GATC 6 cut(s) 348, 388, 476, 577, 786, 1371
LguI GCTCTTC 1 cut(s) 229
LmnI GCTCC 6 cut(s) 112, 154, 306, 326, 1024, 1125
Lsp1109I GCAGC 1 cut(s) 513
LweI GCATC 5 cut(s) 308, 498, 856, 865, 1339
MaeI CTAG 1 cut(s) 842
MaeII ACGT 2 cut(s) 11, 639
MaeIII GTNAC 2 cut(s) 335, 973
MalI GATC 6 cut(s) 350, 390, 478, 579, 788, 1373
MboI GATC 6 cut(s) 348, 388, 476, 577, 786, 1371
MfeI CAATTG 2 cut(s) 648, 1418
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 4 cut(s) 109, 315, 755, 1029
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 8 cut(s) 77, 524, 648, 697, 1008, 1042, 1357, 1418
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 4 cut(s) 14, 689, 736, 958
Mox20I TGGCCA 1 cut(s) 121
MroNI GCCGGC 1 cut(s) 1339
MscI TGGCCA 1 cut(s) 121
MseI TTAA 2 cut(s) 371, 696
MslI CAYNNNNRTG 3 cut(s) 115, 384, 1204
Msp20I TGGCCA 1 cut(s) 121
MspA1I CMGCKG 1 cut(s) 1184
MspI CCGG 6 cut(s) 315, 426, 439, 480, 737, 1340
MspR9I CCNGG 5 cut(s) 305, 315, 426, 481, 737
MunI CAATTG 2 cut(s) 648, 1418
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 1184
MwoI GCNNNNNNNGC 5 cut(s) 630, 710, 767, 875, 1336
NaeI GCCGGC 1 cut(s) 1341
NciI CCSGG 4 cut(s) 315, 426, 481, 737
NdeII GATC 6 cut(s) 348, 388, 476, 577, 786, 1371
NgoMIV GCCGGC 1 cut(s) 1339
NheI GCTAGC 1 cut(s) 841
NlaIII CATG 6 cut(s) 346, 761, 913, 1055, 1087, 1105
NlaIV GGNNCC 6 cut(s) 302, 313, 437, 478, 884, 1026
NmuCI GTSAC 1 cut(s) 973
PaeR7I CTCGAG 1 cut(s) 496
PciSI GCTCTTC 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 1184
PdiI GCCGGC 1 cut(s) 1341
PfeI GAWTC 1 cut(s) 1216
PflMI CCANNNNNTGG 1 cut(s) 650
PkrI GCNGC 3 cut(s) 503, 1186, 1234
PleI GAGTC 4 cut(s) 13, 688, 736, 958
PpsI GAGTC 4 cut(s) 13, 688, 736, 958
Ppu21I YACGTR 1 cut(s) 640
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 6 cut(s) 302, 313, 437, 478, 884, 1026
PspOMI GGGCCC 1 cut(s) 311
PspPI GGNCC 3 cut(s) 311, 312, 353
PspXI VCTCGAGB 1 cut(s) 496
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 4 cut(s) 638, 656, 884, 1100
RsaNI GTAC 4 cut(s) 637, 655, 883, 1099
RseI CAYNNNNRTG 3 cut(s) 115, 384, 1204
SacI GAGCTC 1 cut(s) 109
SacII CCGCGG 1 cut(s) 1185
SapI GCTCTTC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 371, 696
SatI GCNGC 3 cut(s) 502, 1185, 1233
Sau3AI GATC 6 cut(s) 348, 388, 476, 577, 786, 1371
Sau96I GGNCC 3 cut(s) 311, 312, 353
SchI GAGTC 4 cut(s) 14, 689, 736, 958
ScrFI CCNGG 5 cut(s) 305, 315, 426, 481, 737
SduI GDGCHC 4 cut(s) 109, 315, 755, 1029
SfaNI GCATC 5 cut(s) 308, 498, 856, 865, 1339
SfcI CTRYAG 1 cut(s) 714
Sfr274I CTCGAG 1 cut(s) 496
Sfr303I CCGCGG 1 cut(s) 1185
SgrBI CCGCGG 1 cut(s) 1185
SlaI CTCGAG 1 cut(s) 496
SmiMI CAYNNNNRTG 3 cut(s) 115, 384, 1204
SmlI CTYRAG 2 cut(s) 496, 665
SmoI CTYRAG 2 cut(s) 496, 665
Sse9I AATT 8 cut(s) 77, 524, 648, 697, 1008, 1042, 1357, 1418
SsiI CCGC 6 cut(s) 602, 1029, 1182, 1184, 1232, 1235
SspI AATATT 1 cut(s) 585
SspMI CTAG 1 cut(s) 842
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 5 cut(s) 303, 313, 424, 479, 735
StyI CCWWGG 2 cut(s) 168, 356
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 2 cut(s) 14, 642
TaqI TCGA 4 cut(s) 103, 497, 1178, 1374
TaqII GACCGA 1 cut(s) 887
TasI AATT 8 cut(s) 77, 524, 648, 697, 1008, 1042, 1357, 1418
TatI WGTACW 1 cut(s) 1098
TauI GCSGC 2 cut(s) 1187, 1235
TfiI GAWTC 1 cut(s) 1216
Tru1I TTAA 2 cut(s) 371, 696
Tru9I TTAA 2 cut(s) 371, 696
TscAI CASTG 3 cut(s) 151, 982, 1038
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 1 cut(s) 501
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 9 cut(s) 37, 43, 55, 89, 261, 331, 690, 1008, 1100
TspRI CASTG 3 cut(s) 151, 982, 1038
Van91I CCANNNNNTGG 1 cut(s) 650
XapI RAATTY 1 cut(s) 1357
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 496
XspI CTAG 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.