Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

50668443 .. 50671286

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0332500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCCAAGATCAAGATCGGAATCAACGGATTCGGAAGAATCGGACGTTTGGTTGCTAGGGTCGCCCTACAGAGGGACGATGTTGAGCTCGTCGCTGTCAACGATCCATTCATCACCACCGACTACATGACCTACATGTTTAAGTATGACACCGTCCACGGAGCATGGAAGCACAATGAGCTCAAGGTCAAGGATGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTTGCCGTCTTCGGGCTCAGAAACCCAGAGGAGATCCCATGGGGTTCGGTTGGCGCCGATATTGTTGTGGAGTCTACTGGAGTGTTCACTGATAAGGACAAAGCCGCCGCTCACTTGAAGGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCAAGTAAGGATGCCCCCATGTTTGTTGTGGGAGTCAATGAGCATGAATACAAGTCCAACCTTGCCATTGTTTCCAATGCTAGCTGCACTACCAACTGTCTTGCACCCCTTGCCAAGGTTATCAACGACAGGTTTGGAATTGTTGAGGGTCTTATGACCACCGTGCACTCCATCACTGCCACCCAGAAGACTGTTGATGGACCATCAGCAAAGGACTGGAGAGGTGGACGTGCTGCCTCATTCAACATCATTCCCAGCAGCACTGGAGCTGCCAAGGCTGTCGGAAAGGTTCTGCCTGCTCTCAATGGCAAGTTGACCGGAATGGCCTTCCGTGTACCCACTGTTGATGTTTCAGTTGTTGACCTCACTGTCAGACTTGAGAAGAAGGCAACCTATGACCAGATCAAGGCTGCTATCAAGGAGGAGTCTGAGGGAAAGTTGAAGGGCATCTTGGGTTACACCGATGAGGATGTTGTGTCAACCGACTTCATTGGTGACAACAGGTCTAGCATCTTTGATGCCAAGGCTGGAATTGCATTGAACGACAACTTTGTCAAGCTTGTTTCATGGTACGACAACGAGTGGGGTTACAGTTCCCGTGTGATTGACTTGATTGTGCACATCGCCAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

336

Amino Acids

36.33

Weight (kDa)

8.3

Isoelectric Point (pI)

20.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_N	PF00044	4 - 107	2.3e-34	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C	PF02800	159 - 316	9.7e-72	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	743, 926
AccB1I	GGYRCC	2 cut(s)	278, 350
AccBSI	CCGCTC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	299
AciI	CCGC	2 cut(s)	330, 333
AclWI	GGATC	2 cut(s)	98, 253
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	711, 947
AfiI	CCNNNNNNNGG	6 cut(s)	72, 73, 237, 382, 490, 781
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	4 cut(s)	343, 619, 817, 916
AhdI	GACNNNNNGTC	1 cut(s)	877
AjiI	CACGTC	1 cut(s)	605
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AluBI	AGCT	5 cut(s)	88, 181, 459, 644, 934
AluI	AGCT	5 cut(s)	88, 181, 459, 644, 934
Alw21I	GWGCWC	4 cut(s)	90, 183, 543, 996
Alw44I	GTGCAC	2 cut(s)	539, 992
AlwI	GGATC	2 cut(s)	98, 253
AoxI	GGCC	2 cut(s)	3, 699
ApaLI	GTGCAC	2 cut(s)	539, 992
ApeKI	GCWGC	5 cut(s)	459, 608, 633, 644, 785
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	3 cut(s)	106, 227, 881
AsuNHI	GCTAGC	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	575
BaeGI	GKGCMC	2 cut(s)	543, 996
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	278, 350
BanII	GRGCYC	3 cut(s)	90, 183, 243
BbsI	GAAGAC	3 cut(s)	206, 226, 569
Bbv12I	GWGCWC	4 cut(s)	90, 183, 543, 996
BbvI	GCAGC	5 cut(s)	446, 595, 631, 645, 772
BccI	CCATC	3 cut(s)	554, 566, 586
BceAI	ACGGC	1 cut(s)	215
BfaI	CTAG	3 cut(s)	57, 456, 882
BfmI	CTRYAG	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	7 cut(s)	330, 333, 460, 609, 634, 645, 786
BlsI	GCNGC	7 cut(s)	331, 334, 461, 610, 635, 646, 787
Bme18I	GGWCC	1 cut(s)	575
BmeRI	GACNNNNNGTC	1 cut(s)	877
BmgBI	CACGTC	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	2 cut(s)	280, 352
BmsI	GCATC	4 cut(s)	376, 831, 883, 894
BmtI	GCTAGC	1 cut(s)	459
BpiI	GAAGAC	3 cut(s)	206, 226, 569
BpmI	CTGGAG	3 cut(s)	324, 613, 660
BpuEI	CTTGAG	2 cut(s)	167, 773
BsaBI	GATNNNNATC	2 cut(s)	14, 20
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	6 cut(s)	157, 263, 489, 648, 897, 1002
BsaWI	WCCGGW	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	6 cut(s)	72, 73, 237, 382, 490, 781
Bse1I	ACTGG	4 cut(s)	224, 307, 596, 643
Bse8I	GATNNNNATC	2 cut(s)	14, 20
BseDI	CCNNGG	6 cut(s)	157, 263, 489, 648, 897, 1002
BseGI	GGATG	3 cut(s)	199, 391, 850
BseJI	GATNNNNATC	2 cut(s)	14, 20
BseLI	CCNNNNNNNGG	6 cut(s)	72, 73, 237, 382, 490, 781
BseMII	CTCAG	2 cut(s)	256, 795
BseNI	ACTGG	4 cut(s)	224, 307, 596, 643
BseRI	GAGGAG	3 cut(s)	197, 269, 812
BseSI	GKGCMC	2 cut(s)	543, 996
BseXI	GCAGC	5 cut(s)	446, 595, 631, 645, 772
BseYI	CCCAGC	1 cut(s)	629
BsgI	GTGCAG	1 cut(s)	445
BshFI	GGCC	2 cut(s)	5, 701
BshNI	GGYRCC	2 cut(s)	278, 350
BsiHKAI	GWGCWC	4 cut(s)	90, 183, 543, 996
BsiSI	CCGG	1 cut(s)	693
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	6 cut(s)	72, 73, 237, 382, 490, 781
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	5, 701
Bsp1286I	GDGCHC	5 cut(s)	90, 183, 243, 543, 996
Bsp143I	GATC	5 cut(s)	9, 15, 103, 258, 777
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	2 cut(s)	330, 333
BspANI	GGCC	2 cut(s)	5, 701
BspCNI	CTCAG	2 cut(s)	255, 796
BspLI	GGNNCC	2 cut(s)	280, 352
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	98, 253
BspT107I	GGYRCC	2 cut(s)	278, 350
BsrBI	CCGCTC	1 cut(s)	335
BsrI	ACTGG	4 cut(s)	224, 307, 596, 643
BssECI	CCNNGG	6 cut(s)	157, 263, 489, 648, 897, 1002
BssMI	GATC	5 cut(s)	9, 15, 103, 258, 777
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	5 cut(s)	263, 489, 648, 897, 1002
Bst4CI	ACNGT	7 cut(s)	154, 473, 538, 568, 718, 745, 968
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	457, 672
BstDEI	CTNAG	2 cut(s)	242, 804
BstDSI	CCRYGG	2 cut(s)	157, 263
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstF5I	GGATG	3 cut(s)	199, 391, 850
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	5 cut(s)	12, 18, 106, 261, 780
BstMBI	GATC	5 cut(s)	9, 15, 103, 258, 777
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 178, 485, 650, 908
BstNSI	RCATGY	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	68
BstSLI	GKGCMC	2 cut(s)	543, 996
BstV1I	GCAGC	5 cut(s)	446, 595, 631, 645, 772
BstV2I	GAAGAC	3 cut(s)	206, 226, 569
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	5, 701
BtgI	CCRYGG	2 cut(s)	157, 263
BtgZI	GCGATG	1 cut(s)	982
BtrI	CACGTC	1 cut(s)	605
BtsCI	GGATG	3 cut(s)	199, 391, 850
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	5 cut(s)	312, 549, 636, 714, 741
Cac8I	GCNNGC	2 cut(s)	457, 672
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	575
Csp6I	GTAC	2 cut(s)	710, 946
CviAII	CATG	7 cut(s)	127, 136, 165, 264, 394, 419, 942
CviQI	GTAC	2 cut(s)	710, 946
DdeI	CTNAG	2 cut(s)	242, 804
DinI	GGCGCC	1 cut(s)	280
DpnI	GATC	5 cut(s)	11, 17, 105, 260, 779
DpnII	GATC	5 cut(s)	9, 15, 103, 258, 777
DrdI	GACNNNNNNGTC	2 cut(s)	743, 926
DriI	GACNNNNNGTC	1 cut(s)	877
DseDI	GACNNNNNNGTC	2 cut(s)	743, 926
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	215
Eam1105I	GACNNNNNGTC	1 cut(s)	877
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	2 cut(s)	88, 181
Eco130I	CCWWGG	5 cut(s)	263, 489, 648, 897, 1002
Eco24I	GRGCYC	3 cut(s)	90, 183, 243
Eco47I	GGWCC	1 cut(s)	575
Eco53kI	GAGCTC	2 cut(s)	88, 181
EcoICRI	GAGCTC	2 cut(s)	88, 181
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoT14I	CCWWGG	5 cut(s)	263, 489, 648, 897, 1002
EcoT38I	GRGCYC	3 cut(s)	90, 183, 243
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
ErhI	CCWWGG	5 cut(s)	263, 489, 648, 897, 1002
FaeI	CATG	7 cut(s)	130, 139, 168, 267, 397, 422, 945
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	7 cut(s)	126, 135, 164, 263, 393, 418, 941
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	7 cut(s)	330, 333, 460, 609, 634, 645, 786
FokI	GGATG	3 cut(s)	206, 398, 857
FriOI	GRGCYC	3 cut(s)	90, 183, 243
Fsp4HI	GCNGC	7 cut(s)	330, 333, 460, 609, 634, 645, 786
FspBI	CTAG	3 cut(s)	57, 456, 882
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	7 cut(s)	330, 333, 460, 609, 634, 645, 786
GsaI	CCCAGC	1 cut(s)	633
GsuI	CTGGAG	3 cut(s)	324, 613, 660
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	5, 701
HapII	CCGG	1 cut(s)	693
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	7 cut(s)	130, 139, 168, 267, 397, 422, 945
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	4 cut(s)	100, 690, 736, 855
HindII	GTYRAC	4 cut(s)	100, 690, 736, 855
HindIII	AAGCTT	1 cut(s)	932
HinfI	GANTC	6 cut(s)	21, 30, 39, 296, 408, 800
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	3 cut(s)	106, 227, 881
Hpy188I	TCNGA	7 cut(s)	20, 35, 44, 245, 659, 749, 805
Hpy188III	TCNNGA	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	5 cut(s)	337, 352, 712, 754, 811
HpyCH4III	ACNGT	7 cut(s)	154, 473, 538, 568, 718, 745, 968
HpyCH4IV	ACGT	2 cut(s)	46, 604
HpyCH4V	TGCA	5 cut(s)	462, 479, 541, 911, 994
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 178, 485, 650, 908
HpyF3I	CTNAG	2 cut(s)	242, 804
HpySE526I	ACGT	2 cut(s)	46, 604
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	7 cut(s)	130, 139, 168, 267, 397, 422, 945
HspAI	GCGC	1 cut(s)	279
KasI	GGCGCC	1 cut(s)	278
Kzo9I	GATC	5 cut(s)	9, 15, 103, 258, 777
LmnI	GCTCC	2 cut(s)	161, 641
Lsp1109I	GCAGC	5 cut(s)	446, 595, 631, 645, 772
LweI	GCATC	4 cut(s)	376, 831, 883, 894
MaeI	CTAG	3 cut(s)	57, 456, 882
MaeII	ACGT	2 cut(s)	46, 604
MaeIII	GTNAC	3 cut(s)	830, 869, 962
MalI	GATC	5 cut(s)	11, 17, 105, 260, 779
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	5 cut(s)	9, 15, 103, 258, 777
MboII	GAAGA	6 cut(s)	48, 202, 211, 226, 574, 769
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	5 cut(s)	90, 183, 243, 543, 996
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	513, 906
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	279
MlyI	GAGTC	3 cut(s)	305, 417, 809
MmeI	TCCRAC	2 cut(s)	456, 637
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	141, 1009
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	5 cut(s)	62, 178, 485, 650, 908
NarI	GGCGCC	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	263
NdeII	GATC	5 cut(s)	9, 15, 103, 258, 777
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	7 cut(s)	130, 139, 168, 267, 397, 422, 945
NlaIV	GGNNCC	2 cut(s)	280, 352
NmuCI	GTSAC	1 cut(s)	869
NspI	RCATGY	1 cut(s)	139
PciI	ACATGT	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	21, 30, 39
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	7 cut(s)	331, 334, 461, 610, 635, 646, 787
PleI	GAGTC	3 cut(s)	304, 416, 808
PluTI	GGCGCC	1 cut(s)	282
PpsI	GAGTC	3 cut(s)	304, 416, 808
PscI	ACATGT	1 cut(s)	135
Psp124BI	GAGCTC	2 cut(s)	90, 183
PspFI	CCCAGC	1 cut(s)	629
PspN4I	GGNNCC	2 cut(s)	280, 352
PspPI	GGNCC	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	258
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	2 cut(s)	711, 947
RsaNI	GTAC	2 cut(s)	710, 946
SacI	GAGCTC	2 cut(s)	90, 183
SaqAI	TTAA	2 cut(s)	141, 1009
SatI	GCNGC	7 cut(s)	330, 333, 460, 609, 634, 645, 786
Sau3AI	GATC	5 cut(s)	9, 15, 103, 258, 777
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	3 cut(s)	305, 417, 809
SduI	GDGCHC	5 cut(s)	90, 183, 243, 543, 996
SfaNI	GCATC	4 cut(s)	376, 831, 883, 894
SfcI	CTRYAG	1 cut(s)	68
SfoI	GGCGCC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	2 cut(s)	182, 752
SmoI	CTYRAG	2 cut(s)	182, 752
Sse9I	AATT	2 cut(s)	513, 906
SsiI	CCGC	2 cut(s)	330, 333
SspDI	GGCGCC	1 cut(s)	278
SspMI	CTAG	3 cut(s)	57, 456, 882
SstI	GAGCTC	2 cut(s)	90, 183
StyI	CCWWGG	5 cut(s)	263, 489, 648, 897, 1002
TaaI	ACNGT	7 cut(s)	154, 473, 538, 568, 718, 745, 968
TaiI	ACGT	2 cut(s)	49, 607
TasI	AATT	2 cut(s)	513, 906
TauI	GCSGC	2 cut(s)	332, 335
TfiI	GAWTC	3 cut(s)	21, 30, 39
Tru1I	TTAA	2 cut(s)	141, 1009
Tru9I	TTAA	2 cut(s)	141, 1009
TscAI	CASTG	5 cut(s)	319, 556, 643, 721, 748
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	5 cut(s)	459, 608, 633, 644, 785
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	4 cut(s)	100, 435, 853, 930
TspGWI	ACGGA	3 cut(s)	42, 174, 695
TspRI	CASTG	5 cut(s)	319, 556, 643, 721, 748
Tth111I	GACNNNGTC	1 cut(s)	152
VneI	GTGCAC	2 cut(s)	539, 992
VpaK11BI	GGWCC	1 cut(s)	575
XagI	CCTNNNNNAGG	1 cut(s)	488
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	299
XspI	CTAG	3 cut(s)	57, 456, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.