Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

50055128 .. 50055655

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG299500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACCGGGTTGCCCACTTTGTATGATATCAGAAGGAATGCTAGCTATGAAACGCATTTGGTTGGGGAGTTATTGAGGAATGAGGAGGTGAGGGAGGCTTTGGGGGTGTCGAATGAGTCCATAGTTTTCGAGGAATGTAGCCATTTAGTAGGGGAGGTATTGCATGAGGATATGATGAAGAGTGTGAAGTACATGGTGGAGGAGTTGGTGAGGAAGAGCAAGGTTTTGTTGTACCAGGGGCAGTTTGATATGAGATGTGGCGTGGTTGCGAATGAGGCTTGGGTGAAGACCATGAAATGGGAGGGGATAGAGAGGTTTCTGTCGGCGGATAGGAGAGTTTGGGGATTGGGTGGAGAGGTTGCTGGTTATGTTCAGAAATGGGGGAGTCTGAGCTTTGTTTTGGTCTCAGGGGCTGGTCATCTTGTGCCTGCTGACCAGCCATTAAGAGCTCAAGCAATGATTGAAGACTGGGTTTTGGGTAAAGGGTTGTTTGCCAATGTGGAGGAGGATAACCTGTCATCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

175

Amino Acids

19.69

Weight (kDa)

5.06

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	12 - 159	1.8e-34	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	297
AciI	CCGC	1 cut(s)	326
AfaI	GTAC	2 cut(s)	191, 233
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	3 cut(s)	45, 393, 449
AluI	AGCT	3 cut(s)	45, 393, 449
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	100, 220, 295
AsuNHI	GCTAGC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	451
BbsI	GAAGAC	2 cut(s)	293, 471
Bbv12I	GWGCWC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	7, 236
BmrFI	CCNGG	2 cut(s)	7, 236
BmrI	ACTGGG	1 cut(s)	478
BmtI	GCTAGC	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	478
BpiI	GAAGAC	2 cut(s)	293, 471
BpuEI	CTTGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	409
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	380, 420
BseNI	ACTGG	1 cut(s)	473
BseRI	GAGGAG	3 cut(s)	98, 215, 518
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	43
Bso31I	GGTCTC	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	451
BspACI	CCGC	1 cut(s)	326
BspCNI	CTCAG	2 cut(s)	381, 419
BspOI	GCTAGC	1 cut(s)	45
BspQI	GCTCTTC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	236
Bst6I	CTCTTC	2 cut(s)	173, 209
BstC8I	GCNNGC	2 cut(s)	43, 429
BstDEI	CTNAG	2 cut(s)	389, 406
BstMAI	GTCTC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	5, 234
BstV2I	GAAGAC	2 cut(s)	293, 471
Cac8I	GCNNGC	2 cut(s)	43, 429
CaiI	CAGNNNCTG	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	190, 232
CviAII	CATG	3 cut(s)	164, 193, 292
CviJI	RGCY	8 cut(s)	45, 98, 141, 278, 393, 413, 439, 449
CviKI_1	RGCY	8 cut(s)	45, 98, 141, 278, 393, 413, 439, 449
CviQI	GTAC	2 cut(s)	190, 232
DdeI	CTNAG	2 cut(s)	389, 406
Eam1104I	CTCTTC	2 cut(s)	173, 209
EarI	CTCTTC	2 cut(s)	173, 209
EciI	GGCGGA	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	451
Eco31I	GGTCTC	1 cut(s)	409
Eco32I	GATATC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	451
FaeI	CATG	3 cut(s)	167, 196, 295
FatI	CATG	3 cut(s)	163, 192, 291
FriOI	GRGCYC	1 cut(s)	451
FspBI	CTAG	1 cut(s)	42
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	3 cut(s)	167, 196, 295
HinfI	GANTC	2 cut(s)	116, 385
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	3 cut(s)	100, 220, 295
Hpy188I	TCNGA	3 cut(s)	32, 375, 390
HpyAV	CCTTC	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	389, 406
Hsp92II	CATG	3 cut(s)	167, 196, 295
LguI	GCTCTTC	1 cut(s)	209
LpnPI	CCDG	9 cut(s)	19, 221, 248, 348, 393, 399, 441, 449, 454
MaeI	CTAG	1 cut(s)	42
MboII	GAAGA	4 cut(s)	190, 226, 298, 476
MhlI	GDGCHC	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	125, 394
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	523
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	7, 236
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	7
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	3 cut(s)	167, 196, 295
PciSI	GCTCTTC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	297
PleI	GAGTC	2 cut(s)	124, 393
PpsI	GAGTC	2 cut(s)	124, 393
Psp124BI	GAGCTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	191, 233
RsaNI	GTAC	2 cut(s)	190, 232
RseI	CAYNNNNRTG	1 cut(s)	523
SacI	GAGCTC	1 cut(s)	451
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	443
SchI	GAGTC	2 cut(s)	125, 394
ScrFI	CCNGG	2 cut(s)	7, 236
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	9 cut(s)	47, 90, 159, 225, 317, 360, 395, 451, 516
SmiMI	CAYNNNNRTG	1 cut(s)	523
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	451
StyD4I	CCNGG	2 cut(s)	5, 234
TaqI	TCGA	2 cut(s)	110, 129
TatI	WGTACW	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TspDTI	ATGAA	3 cut(s)	63, 191, 308
Van91I	CCANNNNNTGG	1 cut(s)	297
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.