Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003335.1

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

26681 .. 28126

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003335.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggaccccactgccacatcagcactggtcaacgctgctgaccagtcaactttccggccatttttccgacgactttttctgaccacttttgccggtcaaaatttccgggggaccaaattaagccgaactgtgggggttcgtcctcactccaagcttggagcttgtagagttctctccaaacttagacatctcaaggccgatggaatcttggatacgattctcgagtctagccaggacgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggtaaataaggtgaaatccatcatcctaatgactcgtcatatggatttagctggggttgctataggaaatggggagacagacccggtgatccaagtgaaaactcatgctgtaaatgcttacttttcgggtttgatcaatgagaggcagaagagggaggtagaggagcttcaatttgaggcagtggatttgtctagagctgggaaatggagcgaggcgaaaattgcaagaagcagagtgttggataggttgcaagacatgaccgggttgcccactttgtatgatatcagaaggaatgctagctatgaaacgcatttggttggggagttattgaggaatgaggaggtgaggaaggctttgggggtgtcgaatgagtccatagttttcgaggaatgtagccatttggtgggggaggtattgcatgaggatatgatgaagagtgtgaagtacatggtggaagagttggtgaggaagagcaaggttttgttgcaccaggggcagtttgatatgagatgcggcgtagttgcgaatgaggcttgggtgaagaccatgaaatgggaagggatagagaggtttctgtcggcggataggagagtttggagattgggtggagaggttgctggttatgttcagaaatggggaagtctgagctttgttttggtctcaggggctggtcatcttgtgcctgctgaccagccattaagagctcaagcaatgattgaagactgggttttgggtaaagggttgttcgccaatgtggaggaggataacctgtcatcaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

357

Amino Acids

39.93

Weight (kDa)

7.14

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	694, 843
AciI	CCGC	2 cut(s)	804, 872
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	1 cut(s)	737
AfiI	CCNNNNNNNGG	3 cut(s)	130, 694, 843
AgsI	TTSAA	2 cut(s)	461, 1010
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	231, 780
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	2 cut(s)	359, 955
AlwI	GGATC	1 cut(s)	373
AlwNI	CAGNNNCTG	1 cut(s)	959
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	2 cut(s)	56, 195
ApeKI	GCWGC	2 cut(s)	35, 281
ApoI	RAATTY	1 cut(s)	100
AspS9I	GGNCC	2 cut(s)	4, 111
AsuC2I	CCSGG	3 cut(s)	107, 374, 553
AsuHPI	GGTGA	5 cut(s)	313, 388, 646, 766, 841
AsuNHI	GCTAGC	1 cut(s)	587
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	4, 111
BanII	GRGCYC	1 cut(s)	997
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
BbsI	GAAGAC	2 cut(s)	839, 1017
Bbv12I	GWGCWC	1 cut(s)	997
BbvI	GCAGC	2 cut(s)	22, 293
BccI	CCATC	2 cut(s)	194, 317
BciT130I	CCWGG	2 cut(s)	233, 782
BciVI	GTATCC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	423
BcnI	CCSGG	3 cut(s)	107, 374, 553
BcoDI	GTCTC	2 cut(s)	359, 955
BfaI	CTAG	3 cut(s)	228, 483, 588
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	3 cut(s)	36, 282, 805
BlsI	GCNGC	3 cut(s)	37, 283, 806
Bme1390I	CCNGG	5 cut(s)	107, 233, 374, 553, 782
Bme18I	GGWCC	2 cut(s)	4, 111
BmeT110I	CYCGRG	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	4, 111
BmiI	GGNNCC	2 cut(s)	6, 112
BmrFI	CCNGG	5 cut(s)	107, 233, 374, 553, 782
BmrI	ACTGGG	1 cut(s)	1024
BmsI	GCATC	1 cut(s)	791
BmtI	GCTAGC	1 cut(s)	591
BmuI	ACTGGG	1 cut(s)	1024
BpiI	GAAGAC	2 cut(s)	839, 1017
BpuEI	CTTGAG	3 cut(s)	176, 243, 981
BpuMI	CCSGG	3 cut(s)	107, 374, 553
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	2 cut(s)	106, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	880, 910
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 694, 843
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	30, 43, 1019
Bse3DI	GCAATG	1 cut(s)	1008
BseBI	CCWGG	2 cut(s)	233, 782
BseDI	CCNNGG	2 cut(s)	106, 781
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	130, 694, 843
BseMI	GCAATG	1 cut(s)	1008
BseMII	CTCAG	2 cut(s)	926, 966
BseNI	ACTGG	3 cut(s)	30, 43, 1019
BseRI	GAGGAG	3 cut(s)	467, 644, 1064
BseXI	GCAGC	2 cut(s)	22, 293
BseYI	CCCAGC	2 cut(s)	341, 488
BshFI	GGCC	2 cut(s)	58, 197
BsiHKAI	GWGCWC	1 cut(s)	997
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	5 cut(s)	55, 93, 106, 374, 552
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	3 cut(s)	130, 694, 843
BsmAI	GTCTC	2 cut(s)	359, 955
BsmFI	GGGAC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	58, 197
Bso31I	GGTCTC	1 cut(s)	955
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp143I	GATC	2 cut(s)	378, 423
BspACI	CCGC	2 cut(s)	804, 872
BspANI	GGCC	2 cut(s)	58, 197
BspCNI	CTCAG	2 cut(s)	927, 965
BspLI	GGNNCC	2 cut(s)	6, 112
BspOI	GCTAGC	1 cut(s)	591
BspPI	GGATC	1 cut(s)	373
BspQI	GCTCTTC	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	955
BsrDI	GCAATG	1 cut(s)	1008
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	30, 43, 1019
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	106, 781
BssMI	GATC	2 cut(s)	378, 423
Bst2UI	CCWGG	2 cut(s)	233, 782
Bst4CI	ACNGT	2 cut(s)	130, 247
Bst6I	CTCTTC	4 cut(s)	434, 719, 741, 755
BstC8I	GCNNGC	3 cut(s)	255, 589, 975
BstDEI	CTNAG	4 cut(s)	182, 286, 935, 952
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	381, 426
BstMAI	GTCTC	2 cut(s)	359, 955
BstMBI	GATC	2 cut(s)	378, 423
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 269, 278, 347, 404, 512, 784, 821
BstNI	CCWGG	2 cut(s)	233, 782
BstSCI	CCNGG	5 cut(s)	105, 231, 372, 551, 780
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	22, 293
BstV2I	GAAGAC	2 cut(s)	839, 1017
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	58, 197
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	312
BtsI	GCAGTG	2 cut(s)	9, 477
BtsIMutI	CAGTG	3 cut(s)	9, 23, 477
Cac8I	GCNNGC	3 cut(s)	255, 589, 975
CaiI	CAGNNNCTG	1 cut(s)	959
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	4, 111
Csp6I	GTAC	1 cut(s)	736
CviAII	CATG	5 cut(s)	395, 547, 710, 739, 838
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	4 cut(s)	182, 286, 935, 952
DpnI	GATC	2 cut(s)	380, 425
DpnII	GATC	2 cut(s)	378, 423
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	4 cut(s)	434, 719, 741, 755
EarI	CTCTTC	4 cut(s)	434, 719, 741, 755
EciI	GGCGGA	1 cut(s)	887
Ecl136II	GAGCTC	1 cut(s)	995
Eco24I	GRGCYC	1 cut(s)	997
Eco31I	GGTCTC	1 cut(s)	955
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	4, 111
Eco53kI	GAGCTC	1 cut(s)	995
Eco88I	CYCGRG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	995
EcoRII	CCWGG	2 cut(s)	231, 780
EcoRV	GATATC	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	997
FaeI	CATG	5 cut(s)	398, 550, 713, 742, 841
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	5 cut(s)	394, 546, 709, 738, 837
FauNDI	CATATG	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	36, 282, 805
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	997
Fsp4HI	GCNGC	3 cut(s)	36, 282, 805
FspBI	CTAG	3 cut(s)	228, 483, 588
GluI	GCNGC	3 cut(s)	36, 282, 805
GsaI	CCCAGC	2 cut(s)	345, 492
HaeIII	GGCC	2 cut(s)	58, 197
HapII	CCGG	5 cut(s)	55, 93, 106, 374, 552
Hin1II	CATG	5 cut(s)	398, 550, 713, 742, 841
HincII	GTYRAC	2 cut(s)	31, 48
HindII	GTYRAC	2 cut(s)	31, 48
HindIII	AAGCTT	2 cut(s)	152, 261
HinfI	GANTC	5 cut(s)	204, 217, 224, 322, 662
HpaII	CCGG	5 cut(s)	55, 93, 106, 374, 552
HphI	GGTGA	5 cut(s)	313, 388, 646, 766, 841
Hpy166II	GTNNAC	2 cut(s)	31, 48
Hpy188I	TCNGA	5 cut(s)	68, 81, 578, 921, 936
Hpy188III	TCNNGA	2 cut(s)	221, 483
Hpy8I	GTNNAC	2 cut(s)	31, 48
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	3 cut(s)	573, 634, 842
HpyCH4III	ACNGT	2 cut(s)	130, 247
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	515, 541, 709, 778
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 269, 278, 347, 404, 512, 784, 821
HpyF3I	CTNAG	4 cut(s)	182, 286, 935, 952
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	398, 550, 713, 742, 841
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	2 cut(s)	378, 423
LguI	GCTCTTC	1 cut(s)	755
LmnI	GCTCC	3 cut(s)	158, 454, 498
Lsp1109I	GCAGC	2 cut(s)	22, 293
LweI	GCATC	1 cut(s)	791
MaeI	CTAG	3 cut(s)	228, 483, 588
MaeII	ACGT	1 cut(s)	237
MalI	GATC	2 cut(s)	380, 425
MboI	GATC	2 cut(s)	378, 423
MboII	GAAGA	6 cut(s)	451, 736, 758, 772, 844, 1022
MhlI	GDGCHC	1 cut(s)	997
MluCI	AATT	4 cut(s)	100, 116, 461, 510
MlyI	GAGTC	3 cut(s)	233, 316, 671
MmeI	TCCRAC	2 cut(s)	91, 510
MseI	TTAA	2 cut(s)	119, 989
MslI	CAYNNNNRTG	2 cut(s)	317, 1069
MspI	CCGG	5 cut(s)	55, 93, 106, 374, 552
MspR9I	CCNGG	5 cut(s)	107, 233, 374, 553, 782
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	2 cut(s)	233, 782
MwoI	GCNNNNNNNGC	8 cut(s)	20, 269, 278, 347, 404, 512, 784, 821
NciI	CCSGG	3 cut(s)	107, 374, 553
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	2 cut(s)	378, 423
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	5 cut(s)	398, 550, 713, 742, 841
NlaIV	GGNNCC	2 cut(s)	6, 112
PaeR7I	CTCGAG	1 cut(s)	221
PciSI	GCTCTTC	1 cut(s)	755
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	204, 217
PflMI	CCANNNNNTGG	2 cut(s)	694, 843
PkrI	GCNGC	3 cut(s)	37, 283, 806
PleI	GAGTC	3 cut(s)	232, 316, 670
PpsI	GAGTC	3 cut(s)	232, 316, 670
Psp124BI	GAGCTC	1 cut(s)	997
Psp6I	CCWGG	2 cut(s)	231, 780
PspFI	CCCAGC	2 cut(s)	341, 488
PspGI	CCWGG	2 cut(s)	231, 780
PspN4I	GGNNCC	2 cut(s)	6, 112
PspPI	GGNCC	2 cut(s)	4, 111
PstNI	CAGNNNCTG	1 cut(s)	959
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
RseI	CAYNNNNRTG	2 cut(s)	317, 1069
SacI	GAGCTC	1 cut(s)	997
SapI	GCTCTTC	1 cut(s)	755
SaqAI	TTAA	2 cut(s)	119, 989
SatI	GCNGC	3 cut(s)	36, 282, 805
Sau3AI	GATC	2 cut(s)	378, 423
Sau96I	GGNCC	2 cut(s)	4, 111
SchI	GAGTC	3 cut(s)	233, 316, 671
ScrFI	CCNGG	5 cut(s)	107, 233, 374, 553, 782
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	1 cut(s)	791
SfcI	CTRYAG	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	221
SinI	GGWCC	2 cut(s)	4, 111
SlaI	CTCGAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	317, 1069
SmlI	CTYRAG	4 cut(s)	191, 221, 258, 996
SmoI	CTYRAG	4 cut(s)	191, 221, 258, 996
Sse9I	AATT	4 cut(s)	100, 116, 461, 510
SsiI	CCGC	2 cut(s)	804, 872
SspMI	CTAG	3 cut(s)	228, 483, 588
SstI	GAGCTC	1 cut(s)	997
StyD4I	CCNGG	5 cut(s)	105, 231, 372, 551, 780
TaaI	ACNGT	2 cut(s)	130, 247
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	3 cut(s)	222, 656, 675
TasI	AATT	4 cut(s)	100, 116, 461, 510
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	1 cut(s)	807
TfiI	GAWTC	2 cut(s)	204, 217
Tru1I	TTAA	2 cut(s)	119, 989
Tru9I	TTAA	2 cut(s)	119, 989
TscAI	CASTG	3 cut(s)	16, 30, 477
TseI	GCWGC	2 cut(s)	35, 281
TspDTI	ATGAA	3 cut(s)	609, 737, 854
TspRI	CASTG	3 cut(s)	16, 30, 477
Van91I	CCANNNNNTGG	2 cut(s)	694, 843
VpaK11BI	GGWCC	2 cut(s)	4, 111
XapI	RAATTY	1 cut(s)	100
XbaI	TCTAGA	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XhoI	CTCGAG	1 cut(s)	221
XspI	CTAG	3 cut(s)	228, 483, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.