Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

30782778 .. 30787044

Gene Structure 4267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCATTGCGCAGACGGACCTTGCTGAAGGTCATCGTTCTCGGCGACAGTGGGGTTGGCAAGACGTCGTTGATGAACCAATATGTGCATAAGAGGTTCAGTCAGCAGTATAAAGCTACAATAGGTGCAGACTTTGTCACCAAAGAACTCCAAATTGATGACAGGCTTGTTACCCTACAGATATGGGACACGGCTGGGCAGGAGAGATTTCAAAGTCTTGGAGTTGCGTTCTATAGAGGGGCAGATTGCTGTGTTCTAGTTTATGATGTTAATGTAATGAAGTCCTTTGATACTCTTGATAACTGGCACGAGGAGTTTCTCAAGCAGGCCAACCCTGCTGATCCCAAGACATTTCCGTTTATATTGCTTGGTAACAAGATTGATATCGATGGTGGGAATAGTCGTGTGGTTTCTGAGAAGAAAGCAAAGGACTGGTGTGCATCAAAGGGGAACATACCTTACTTTGAGACATCAGCAAAAGAAGATTACAATGTTGACGCAGCATTCCTTTGTATTGCCAAGACTGCTCTTGCAAATGAACATGAGCAGGACATATATTTCCAGGGCATCCCGGATGCTGTTTCAGAGTCTGATCAAAGAGGTGGTTGTGCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

205

Amino Acids

22.98

Weight (kDa)

5.43

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 135	3.6e-12	ADP-ribosylation factor family
Ras	PF00071	10 - 176	1.5e-55	Ras family
Roc	PF08477	10 - 128	9.3e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	10 - 109	1.8e-07	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	10 - 129	7.2e-06	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	68
Acc16I	TGCGCA	1 cut(s)	11
AclWI	GGATC	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	18
BauI	CACGAG	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	563
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	2 cut(s)	176, 232
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	2 cut(s)	563, 572
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	563, 572
BmsI	GCATC	3 cut(s)	449, 565, 576
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	562
Bse1I	ACTGG	2 cut(s)	308, 437
Bse3DI	GCAATG	1 cut(s)	5
Bse8I	GATNNNNATC	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	563
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	2 cut(s)	567, 580
BseJI	GATNNNNATC	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	308, 437
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	512
BseYI	CCCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	340, 592
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	406
BspDI	ATCGAT	1 cut(s)	387
BspPI	GGATC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	308, 437
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	2 cut(s)	340, 592
BssNI	GRCGYC	1 cut(s)	65
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	327, 613
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	567, 580
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	2 cut(s)	343, 595
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	2 cut(s)	340, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 524
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	2 cut(s)	561, 570
BstSFI	CTRYAG	2 cut(s)	176, 232
BstV1I	GCAGC	1 cut(s)	512
Bsu15I	ATCGAT	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	567, 580
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	327, 613
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	1 cut(s)	506
CviAII	CATG	2 cut(s)	542, 612
CviJI	RGCY	4 cut(s)	116, 166, 194, 329
CviKI_1	RGCY	4 cut(s)	116, 166, 194, 329
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	2 cut(s)	342, 594
DpnII	GATC	2 cut(s)	340, 592
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	561
EcoRV	GATATC	1 cut(s)	385
FaeI	CATG	2 cut(s)	545, 615
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	2 cut(s)	541, 611
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	2 cut(s)	554, 587
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	1 cut(s)	257
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	501
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	572
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	545, 615
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	587
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	3 cut(s)	415, 586, 592
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	5 cut(s)	88, 128, 440, 533, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 524
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	65
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	545, 615
HspAI	GCGC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	2 cut(s)	340, 592
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	3 cut(s)	449, 565, 576
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	3 cut(s)	136, 169, 371
MalI	GATC	2 cut(s)	342, 594
MboI	GATC	2 cut(s)	340, 592
MboII	GAAGA	2 cut(s)	430, 494
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	596
MnlI	CCTC	4 cut(s)	87, 230, 304, 593
MseI	TTAA	1 cut(s)	270
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	2 cut(s)	563, 572
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	335, 524
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	340, 592
NlaIII	CATG	2 cut(s)	545, 615
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	136
NsbI	TGCGCA	1 cut(s)	11
NspI	RCATGY	1 cut(s)	615
PaeI	GCATGC	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	503
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	570
PkrI	GCNGC	1 cut(s)	502
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	18
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PstNI	CAGNNNCTG	1 cut(s)	590
PsyI	GACNNNGTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	2 cut(s)	340, 592
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	563, 572
SetI	ASST	8 cut(s)	23, 33, 68, 98, 118, 127, 460, 604
SfaNI	GCATC	3 cut(s)	449, 565, 576
SfcI	CTRYAG	2 cut(s)	176, 232
SinI	GGWCC	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SphI	GCATGC	1 cut(s)	615
Sse9I	AATT	1 cut(s)	153
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	561, 570
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	387
TasI	AATT	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	3 cut(s)	89, 293, 552
TspGWI	ACGGA	2 cut(s)	31, 345
TspRI	CASTG	1 cut(s)	55
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	18
XceI	RCATGY	1 cut(s)	615
XspI	CTAG	1 cut(s)	257
ZraI	GACGTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.