Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

62078293 .. 62079630

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGAGTCTGCCCCCCAAAACCTCCTGTGCTTCTTCTTCTTCTTCTTCCTCCTCCACCGCACCACAGCCTCATCACCGCCGCCTCTCTTCCCCAAACAAGCCCTCCCAACGAAGTCAGGCTACCTCCCAGTCAACCCCACCACAAAATCTGCCATATACTACACTTTCTATGAGGCTCAAACCCCAATCTCACCTCTCTCACAAACTCCACTCCTCATTTGGCTCCAGGGCGGCCCCGGCTGCTCCTCCATGATCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAACTTCCACAAGCAACCCTCCGAGCCCCTTGCCTTGGAGCCCAACTCTGGTTCTTGGAACCGCATTTTCGGCTTGGTTTTTCTTGACAATCCTATAGGCACCGGATTCAGCATCGCTGCGAAGCCCGAAGAGATACCAACTGATCAGTTTGGAGTTGCAAAGCACTTGTTCGCTGCGATCACCAAGTTTGTTGAGCTTGATCCAGCTTTTAAGTCGAGGCCTATTTACATTACTGGGGAGAGCTATGCAGGGAAGTATGTTCCGGCTATTGGTTACTACATTTTGAAGAGGAATGCTGAGTTAAGTGAGTCTAAGCGTGTGAATTTGCGCGGTGTTGCTATCGGAGATGGGCTAACAGACCCGGTGATTCAGGTGGCTACTCATGCTGCGAATACTTACTTCTCTGGTTTGATCAATGAGAGGCAGAAGAGTGAACTGGAGGAGCTTCAAGTAGCGGTGGTGAGGTTGATTAAGGCGAGGAATTGGAGTGAGGCAAGGAATGGCCGAAACAGAATTTTGGGGAGGTTGCAAAATATGACAGGGCTGGCTACTTTGTATGACTACACAAAGAATGCCGACTACGAAACCAGTTTGGTTGGGGAGTTGTTGAGCCATAAGGAGGTGAAGAAGGCGTTGGGGGTGTCGAATGTGTCAATTGTTTTTGAGGAGTGTAGTGATTTAGTGGGAGATGTGTTGCACGCGGATGTGATGAAGAGTGTGAAATACATGGTGGAGTTTCTTGTGAAGAACAGCAAGGTGTTGCTGTATCAAGGGCAGTATGATCTGCGAGACGGTGTGTTTTCCACCGAGGCTTGGGTGAAGACCATGAAATGGGAAGGGATACAGAAGTTTCTGTCGGCAGATCGGAATGTGTGGAAGTTGGGTGGAGACACTGCTGGTTATGTTCAGAAATGGGGGAGTTTGAGCCAAGTTGCGGTTTCAGGTGCTGGTCATCTTTTGCCAGCTGACCAGCCATTGAGAGCTCAAGCAATGATTGAAGACTGGGTTTTGGATAAAGGGTTGTTTGCCAATGTTAAAGAGGCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

445

Amino Acids

49.46

Weight (kDa)

8.2

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	34 - 432	5.4e-98	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	1119
AccII	CGCG	3 cut(s)	285, 618, 989
AciI	CCGC	9 cut(s)	58, 77, 80, 231, 349, 618, 743, 989, 1223
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	2 cut(s)	610, 801
AfiI	CCNNNNNNNGG	7 cut(s)	322, 335, 557, 907, 1101, 1119, 1222
AgsI	TTSAA	3 cut(s)	574, 737, 1286
AjnI	CCWGG	2 cut(s)	225, 278
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AluBI	AGCT	7 cut(s)	271, 484, 494, 531, 733, 1253, 1271
AluI	AGCT	7 cut(s)	271, 484, 494, 531, 733, 1253, 1271
Alw21I	GWGCWC	2 cut(s)	273, 1273
Alw26I	GTCTC	2 cut(s)	1071, 1170
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	1235
AoxI	GGCC	3 cut(s)	232, 506, 790
ApeKI	GCWGC	4 cut(s)	240, 404, 461, 674
ApoI	RAATTY	2 cut(s)	610, 801
AspLEI	GCGC	2 cut(s)	285, 618
AspS9I	GGNCC	2 cut(s)	233, 275
AsuC2I	CCSGG	2 cut(s)	237, 650
AsuHPI	GGTGA	7 cut(s)	66, 183, 460, 664, 760, 922, 1117
AvaII	GGWCC	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	1121, 1154
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	4 cut(s)	273, 315, 330, 1273
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbsI	GAAGAC	2 cut(s)	1115, 1293
Bbv12I	GWGCWC	2 cut(s)	273, 1273
BbvI	GCAGC	4 cut(s)	227, 391, 448, 661
BccI	CCATC	1 cut(s)	629
BcgI	CGANNNNNNTGC	4 cut(s)	247, 281, 299, 333
BciT130I	CCWGG	2 cut(s)	227, 280
BciVI	GTATCC	1 cut(s)	1122
BclI	TGATCA	2 cut(s)	430, 699
BcnI	CCSGG	2 cut(s)	237, 650
BcoDI	GTCTC	2 cut(s)	1071, 1170
BfmI	CTRYAG	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	1122
BisI	GCNGC	6 cut(s)	80, 232, 241, 405, 462, 675
BlsI	GCNGC	6 cut(s)	81, 233, 242, 406, 463, 676
Bme1390I	CCNGG	4 cut(s)	227, 237, 280, 650
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	233, 275
BmiI	GGNNCC	6 cut(s)	224, 235, 277, 327, 347, 388
BmrFI	CCNGG	4 cut(s)	227, 237, 280, 650
BmrI	ACTGGG	3 cut(s)	122, 531, 1300
BmsI	GCATC	1 cut(s)	408
BmuI	ACTGGG	3 cut(s)	122, 531, 1300
BpiI	GAAGAC	2 cut(s)	1115, 1293
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BpmI	CTGGAG	2 cut(s)	209, 746
BpuEI	CTTGAG	1 cut(s)	1257
BpuMI	CCSGG	2 cut(s)	237, 650
BsaJI	CCNNGG	5 cut(s)	226, 235, 278, 321, 1095
BsaWI	WCCGGW	1 cut(s)	389
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	7 cut(s)	322, 335, 557, 907, 1101, 1119, 1222
Bse1I	ACTGG	5 cut(s)	128, 526, 729, 876, 1295
Bse3DI	GCAATG	1 cut(s)	1284
BseBI	CCWGG	2 cut(s)	227, 280
BseDI	CCNNGG	5 cut(s)	226, 235, 278, 321, 1095
BseGI	GGATG	1 cut(s)	997
BseLI	CCNNNNNNNGG	7 cut(s)	322, 335, 557, 907, 1101, 1119, 1222
BseMI	GCAATG	1 cut(s)	1284
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	5 cut(s)	128, 526, 729, 876, 1295
BseRI	GAGGAG	5 cut(s)	41, 203, 235, 743, 968
BseXI	GCAGC	4 cut(s)	227, 391, 448, 661
Bsh1236I	CGCG	3 cut(s)	285, 618, 989
BshFI	GGCC	3 cut(s)	234, 508, 792
BshNI	GGYRCC	1 cut(s)	386
BsiHKAI	GWGCWC	2 cut(s)	273, 1273
BsiSI	CCGG	4 cut(s)	237, 390, 551, 650
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	7 cut(s)	322, 335, 557, 907, 1101, 1119, 1222
BsmAI	GTCTC	2 cut(s)	1071, 1170
BsmBI	CGTCTC	1 cut(s)	1071
BsmFI	GGGAC	1 cut(s)	261
BsmI	GAATGC	2 cut(s)	586, 865
BsnI	GGCC	3 cut(s)	234, 508, 792
Bsp1286I	GDGCHC	4 cut(s)	273, 315, 330, 1273
Bsp143I	GATC	7 cut(s)	252, 430, 465, 487, 699, 1069, 1150
BspACI	CCGC	9 cut(s)	58, 77, 80, 231, 349, 618, 743, 989, 1223
BspANI	GGCC	3 cut(s)	234, 508, 792
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	3 cut(s)	285, 618, 989
BspLI	GGNNCC	6 cut(s)	224, 235, 277, 327, 347, 388
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	1284
BsrI	ACTGG	5 cut(s)	128, 526, 729, 876, 1295
BssECI	CCNNGG	5 cut(s)	226, 235, 278, 321, 1095
BssMI	GATC	7 cut(s)	252, 430, 465, 487, 699, 1069, 1150
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	227, 280
Bst4CI	ACNGT	1 cut(s)	1082
Bst6I	CTCTTC	5 cut(s)	92, 411, 569, 710, 995
BstC8I	GCNNGC	3 cut(s)	834, 987, 1251
BstDEI	CTNAG	2 cut(s)	585, 600
BstF5I	GGATG	1 cut(s)	997
BstFNI	CGCG	3 cut(s)	285, 618, 989
BstHHI	GCGC	2 cut(s)	285, 618
BstKTI	GATC	7 cut(s)	255, 433, 468, 490, 702, 1072, 1153
BstMAI	GTCTC	2 cut(s)	1071, 1170
BstMBI	GATC	7 cut(s)	252, 430, 465, 487, 699, 1069, 1150
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 240, 357, 671
BstNI	CCWGG	2 cut(s)	227, 280
BstSCI	CCNGG	4 cut(s)	225, 235, 278, 648
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	3 cut(s)	285, 618, 989
BstV1I	GCAGC	4 cut(s)	227, 391, 448, 661
BstV2I	GAAGAC	2 cut(s)	1115, 1293
BsuI	GTATCC	1 cut(s)	1122
BsuRI	GGCC	3 cut(s)	234, 508, 792
BtgZI	GCGATG	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	997
BtsI	GCAGTG	1 cut(s)	1179
BtsIMutI	CAGTG	1 cut(s)	1179
Cac8I	GCNNGC	3 cut(s)	834, 987, 1251
CaiI	CAGNNNCTG	1 cut(s)	1235
CfoI	GCGC	2 cut(s)	285, 618
Cfr13I	GGNCC	2 cut(s)	233, 275
CseI	GACGC	1 cut(s)	274
CviAII	CATG	4 cut(s)	250, 671, 1015, 1114
DdeI	CTNAG	2 cut(s)	585, 600
DpnI	GATC	7 cut(s)	254, 432, 467, 489, 701, 1071, 1152
DpnII	GATC	7 cut(s)	252, 430, 465, 487, 699, 1069, 1150
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	5 cut(s)	92, 411, 569, 710, 995
EarI	CTCTTC	5 cut(s)	92, 411, 569, 710, 995
Ecl136II	GAGCTC	2 cut(s)	271, 1271
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	508
Eco24I	GRGCYC	4 cut(s)	273, 315, 330, 1273
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	2 cut(s)	271, 1271
EcoICRI	GAGCTC	2 cut(s)	271, 1271
EcoRII	CCWGG	2 cut(s)	225, 278
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	4 cut(s)	273, 315, 330, 1273
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	1071
FaeI	CATG	4 cut(s)	253, 674, 1018, 1117
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	4 cut(s)	249, 670, 1014, 1113
FbaI	TGATCA	2 cut(s)	430, 699
Fnu4HI	GCNGC	6 cut(s)	80, 232, 241, 405, 462, 675
FokI	GGATG	1 cut(s)	1004
FriOI	GRGCYC	4 cut(s)	273, 315, 330, 1273
Fsp4HI	GCNGC	6 cut(s)	80, 232, 241, 405, 462, 675
GlaI	GCGC	2 cut(s)	284, 617
GluI	GCNGC	6 cut(s)	80, 232, 241, 405, 462, 675
GsuI	CTGGAG	2 cut(s)	209, 746
HaeIII	GGCC	3 cut(s)	234, 508, 792
HapII	CCGG	4 cut(s)	237, 390, 551, 650
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	2 cut(s)	285, 618
Hin1II	CATG	4 cut(s)	253, 674, 1018, 1117
Hin6I	GCGC	2 cut(s)	283, 616
HinP1I	GCGC	2 cut(s)	283, 616
HincII	GTYRAC	2 cut(s)	133, 289
HindII	GTYRAC	2 cut(s)	133, 289
HinfI	GANTC	4 cut(s)	5, 393, 596, 655
HpaII	CCGG	4 cut(s)	237, 390, 551, 650
HphI	GGTGA	7 cut(s)	66, 183, 460, 664, 760, 922, 1117
Hpy166II	GTNNAC	3 cut(s)	133, 289, 722
Hpy188I	TCNGA	4 cut(s)	310, 632, 1155, 1197
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	3 cut(s)	133, 289, 722
HpyAV	CCTTC	2 cut(s)	910, 1118
HpyCH4III	ACNGT	1 cut(s)	1082
HpyCH4V	TGCA	4 cut(s)	446, 536, 817, 985
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 240, 357, 671
HpyF3I	CTNAG	2 cut(s)	585, 600
Hsp92II	CATG	4 cut(s)	253, 674, 1018, 1117
HspAI	GCGC	2 cut(s)	283, 616
Ksp22I	TGATCA	2 cut(s)	430, 699
Kzo9I	GATC	7 cut(s)	252, 430, 465, 487, 699, 1069, 1150
LmnI	GCTCC	4 cut(s)	228, 248, 325, 730
Lsp1109I	GCAGC	4 cut(s)	227, 391, 448, 661
LweI	GCATC	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	7 cut(s)	254, 432, 467, 489, 701, 1071, 1152
MboI	GATC	7 cut(s)	252, 430, 465, 487, 699, 1069, 1150
MfeI	CAATTG	1 cut(s)	942
MhlI	GDGCHC	4 cut(s)	273, 315, 330, 1273
MluCI	AATT	4 cut(s)	610, 769, 801, 942
MlyI	GAGTC	2 cut(s)	14, 605
MseI	TTAA	4 cut(s)	498, 590, 759, 1323
MslI	CAYNNNNRTG	1 cut(s)	990
MspA1I	CMGCKG	1 cut(s)	1253
MspI	CCGG	4 cut(s)	237, 390, 551, 650
MspR9I	CCNGG	4 cut(s)	227, 237, 280, 650
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	2 cut(s)	586, 865
MvaI	CCWGG	2 cut(s)	227, 280
MvnI	CGCG	3 cut(s)	285, 618, 989
MwoI	GCNNNNNNNGC	4 cut(s)	237, 240, 357, 671
NciI	CCSGG	2 cut(s)	237, 650
NdeII	GATC	7 cut(s)	252, 430, 465, 487, 699, 1069, 1150
NlaIII	CATG	4 cut(s)	253, 674, 1018, 1117
NlaIV	GGNNCC	6 cut(s)	224, 235, 277, 327, 347, 388
PceI	AGGCCT	1 cut(s)	508
PctI	GAATGC	2 cut(s)	586, 865
PfeI	GAWTC	2 cut(s)	393, 655
PflMI	CCANNNNNTGG	1 cut(s)	1119
PkrI	GCNGC	6 cut(s)	81, 233, 242, 406, 463, 676
PleI	GAGTC	2 cut(s)	13, 604
PpsI	GAGTC	2 cut(s)	13, 604
Psp124BI	GAGCTC	2 cut(s)	273, 1273
Psp6I	CCWGG	2 cut(s)	225, 278
PspGI	CCWGG	2 cut(s)	225, 278
PspN4I	GGNNCC	6 cut(s)	224, 235, 277, 327, 347, 388
PspPI	GGNCC	2 cut(s)	233, 275
PstNI	CAGNNNCTG	1 cut(s)	1235
PvuII	CAGCTG	1 cut(s)	1253
RseI	CAYNNNNRTG	1 cut(s)	990
SacI	GAGCTC	2 cut(s)	273, 1273
SaqAI	TTAA	4 cut(s)	498, 590, 759, 1323
SatI	GCNGC	6 cut(s)	80, 232, 241, 405, 462, 675
Sau3AI	GATC	7 cut(s)	252, 430, 465, 487, 699, 1069, 1150
Sau96I	GGNCC	2 cut(s)	233, 275
SchI	GAGTC	2 cut(s)	14, 605
ScrFI	CCNGG	4 cut(s)	227, 237, 280, 650
SduI	GDGCHC	4 cut(s)	273, 315, 330, 1273
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	990
SmlI	CTYRAG	1 cut(s)	1272
SmoI	CTYRAG	1 cut(s)	1272
Sse9I	AATT	4 cut(s)	610, 769, 801, 942
SseBI	AGGCCT	1 cut(s)	508
SsiI	CCGC	9 cut(s)	58, 77, 80, 231, 349, 618, 743, 989, 1223
SstI	GAGCTC	2 cut(s)	273, 1273
StuI	AGGCCT	1 cut(s)	508
StyD4I	CCNGG	4 cut(s)	225, 235, 278, 648
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	1082
TaqI	TCGA	3 cut(s)	267, 503, 932
TaqII	GACCGA	1 cut(s)	263
TasI	AATT	4 cut(s)	610, 769, 801, 942
TauI	GCSGC	2 cut(s)	82, 234
TfiI	GAWTC	2 cut(s)	393, 655
Tru1I	TTAA	4 cut(s)	498, 590, 759, 1323
Tru9I	TTAA	4 cut(s)	498, 590, 759, 1323
TscAI	CASTG	1 cut(s)	1186
TseI	GCWGC	4 cut(s)	240, 404, 461, 674
TspDTI	ATGAA	2 cut(s)	1013, 1130
TspRI	CASTG	1 cut(s)	1186
Van91I	CCANNNNNTGG	1 cut(s)	1119
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	610, 801
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.