Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002772

Physical Location & Seq

Genomic Coordinates Reverse (-)

50026877 .. 50027986

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG301600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAATTTCCACAAACACCCCTCTGATCCCCTCACCTTGGAACCCAACTCCGGTTCCTGGAACCGCATCTTCGGCTTGGTTTTTCTCGACAATCCCATCGGAACCGGGTTCAGTATAGCTTCCACACCCGAAGAGATTCCGAGAAACCAGTTTGCGGTCGCACAACACCTGTTCGCTGCAATTACCGAGTTCATTGAGCTTGATCCTGTGTTTAGGTCGAGGCCTGTTTACATCACTGGGGAGAGCTATGCAGGCAAGTATATTCCGGCAATTGGGTACTACATTTTGCAGAGGAATATTGATGCTGAGAGTTCTGGGTCCGATCGGCATGTGAATTTAGCTGGGGTTGCTATAGGAAATGGGGAGACAGACCCGGTGATCCAAGTGAAAACTCATGCTGTAAATGCTTACTTTTCGGGTTTGATCAATGAGAGGCAGAAGAGGGAGGTAGAGGAGCTTCAATTTGAGGCAGTGGATTTGTCTAGAGCTGGGAAATGGAGCGAGGCGAAAATTGCAAGAAGCAGAGTGTTGGATAGGTTGCAAGACATGACCGGGTTGCCCACTTTGTATGATATCAGAAGGAATGCTAGCTATGAAACGCATTTGGTTGGGGAGTTATTGAGGATTGAGGAGGTGAGGAAGGCTTTGGGGGTGTCGAATGAGTCCATAGTTTTCGAGGAATGTAGCCATTTGGTGGGGGAGGTATTGCATGAGGATATGATGAAGAGTGTGAAGTACATGGTGGAAGAGTTGGTGAGGAAGAGCAAGGTTTTGTTGTACCAGGGGCAGTTTGATATGAGATGTGGCGTGGTTGCGAATGAGGCTTGGGTGAAGACCATGAAATGGGCGGGGATAGAGAGGTTTCTGTCGGCGGATAGGAGAGTTTGGAGATTGGGTGGAGAGGTTGCTGGTTATGTTCAGAAATGGGGGAGTCTGAGCTTTGTTTTGGTCTCAGGGGCTGGTCATCTTGTGCCTGCTGACCAGCCATTAAGAGCTCAAGCAATGATTGAAGACTGGGTTTTGGGTAAAGGGTTGTTTGCCAATGTGGAGGAGGATAACCTGTCATCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

369

Amino Acids

41.43

Weight (kDa)

5.59

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	2 - 353	4.8e-80	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15000
fragaria_vesca	FvH4_2g21150 FvH4_2g21240 FvH4_4g32480
malus_domestica	MD13G1025000.v1.1 MD16G1027500.v1.1
prunus_persica	Prupe.1G325200_v2.0.a1
pyrus_communis	pycom16g02330
rosa_chinensis	RchiOBHm_Chr4g0441341 RchiOBHm_Chr6g0287751 RchiOBHm_Chr6g0287771 RchiOBHm_Chr6g0287801
rosa_laevigata	RLG00000006100 RLG00000012469
rosa_multiflora	Rmu_sc0003335.1_g000006 Rmu_sc0003335.1_g000008 Rmu_sc0003877.1_g000008 Rmu_sc0003877.1_g000010 Rmu_sc0008122.1_g000001 Rmu_sc0012909.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382230 Rroxscaffold_7G00181130 Rroxscaffold_7G00181230
rosa_rugosa	Rorug04G0332500 Rorug06G0191600
rosa_samantha	Rh4AG384500 Rh4BG398600 Rh4CG413700 Rh4DG391200 Rh6AG301600 Rh6BG307400 Rh6BG307500 Rh6CG315400 Rh6DG299300 Rh6DG299500 Rh6DG299800 Rh6DG300100
rosa_wichuraiana	Rw4G033190 Rw6G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	730, 879
AccII	CGCG	1 cut(s)	36
AciI	CCGC	4 cut(s)	100, 191, 884, 908
AclWI	GGATC	3 cut(s)	56, 233, 409
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	3 cut(s)	314, 773, 815
AfiI	CCNNNNNNNGG	7 cut(s)	73, 86, 93, 190, 308, 730, 879
AgsI	TTSAA	2 cut(s)	497, 1046
AjnI	CCWGG	3 cut(s)	29, 92, 816
Alw21I	GWGCWC	2 cut(s)	24, 1033
Alw26I	GTCTC	2 cut(s)	395, 991
AlwI	GGATC	3 cut(s)	56, 233, 409
AlwNI	CAGNNNCTG	1 cut(s)	995
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	26, 354
AsuC2I	CCSGG	3 cut(s)	142, 410, 589
AsuHPI	GGTGA	5 cut(s)	61, 424, 682, 802, 877
AsuNHI	GCTAGC	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	26, 354
BanII	GRGCYC	2 cut(s)	24, 1033
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BbsI	GAAGAC	2 cut(s)	875, 1053
Bbv12I	GWGCWC	2 cut(s)	24, 1033
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	140
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	3 cut(s)	31, 94, 818
BclI	TGATCA	1 cut(s)	459
BcnI	CCSGG	3 cut(s)	142, 410, 589
BcoDI	GTCTC	2 cut(s)	395, 991
BfaI	CTAG	2 cut(s)	519, 624
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	6 cut(s)	31, 94, 142, 410, 589, 818
Bme18I	GGWCC	2 cut(s)	26, 354
BmgT120I	GGNCC	2 cut(s)	26, 354
BmiI	GGNNCC	6 cut(s)	28, 78, 91, 98, 139, 355
BmrFI	CCNGG	6 cut(s)	31, 94, 142, 410, 589, 818
BmrI	ACTGGG	2 cut(s)	282, 1060
BmsI	GCATC	2 cut(s)	111, 328
BmtI	GCTAGC	1 cut(s)	627
BmuI	ACTGGG	2 cut(s)	282, 1060
BpiI	GAAGAC	2 cut(s)	875, 1053
BpuEI	CTTGAG	1 cut(s)	1017
BpuMI	CCSGG	3 cut(s)	142, 410, 589
BsaI	GGTCTC	1 cut(s)	991
BsaJI	CCNNGG	3 cut(s)	29, 72, 817
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 86, 93, 190, 308, 730, 879
Bse1I	ACTGG	3 cut(s)	184, 277, 1055
Bse3DI	GCAATG	1 cut(s)	1044
BseBI	CCWGG	3 cut(s)	31, 94, 818
BseDI	CCNNGG	3 cut(s)	29, 72, 817
BseLI	CCNNNNNNNGG	7 cut(s)	73, 86, 93, 190, 308, 730, 879
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	3 cut(s)	333, 962, 1002
BseNI	ACTGG	3 cut(s)	184, 277, 1055
BseRI	GAGGAG	3 cut(s)	503, 680, 1100
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	2 cut(s)	377, 524
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	2 cut(s)	195, 361
BshFI	GGCC	1 cut(s)	259
BsiEI	CGRYCG	2 cut(s)	195, 361
BsiHKAI	GWGCWC	2 cut(s)	24, 1033
BsiSI	CCGG	5 cut(s)	87, 141, 302, 410, 588
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	7 cut(s)	73, 86, 93, 190, 308, 730, 879
BsmAI	GTCTC	2 cut(s)	395, 991
BsmFI	GGGAC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	991
Bsp1286I	GDGCHC	2 cut(s)	24, 1033
Bsp143I	GATC	5 cut(s)	61, 238, 358, 414, 459
BspACI	CCGC	4 cut(s)	100, 191, 884, 908
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	3 cut(s)	334, 963, 1001
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	6 cut(s)	28, 78, 91, 98, 139, 355
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	3 cut(s)	56, 233, 409
BspQI	GCTCTTC	1 cut(s)	791
BspTNI	GGTCTC	1 cut(s)	991
BsrDI	GCAATG	1 cut(s)	1044
BsrI	ACTGG	3 cut(s)	184, 277, 1055
BssECI	CCNNGG	3 cut(s)	29, 72, 817
BssMI	GATC	5 cut(s)	61, 238, 358, 414, 459
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	3 cut(s)	31, 94, 818
Bst6I	CTCTTC	5 cut(s)	162, 470, 755, 777, 791
BstC8I	GCNNGC	3 cut(s)	289, 625, 1011
BstDEI	CTNAG	3 cut(s)	342, 971, 988
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	5 cut(s)	64, 241, 361, 417, 462
BstMAI	GTCTC	2 cut(s)	395, 991
BstMBI	GATC	5 cut(s)	61, 238, 358, 414, 459
BstMCI	CGRYCG	2 cut(s)	195, 361
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 288, 383, 440, 548, 857
BstNI	CCWGG	3 cut(s)	31, 94, 818
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	6 cut(s)	29, 92, 140, 408, 587, 816
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	875, 1053
BsuRI	GGCC	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	270, 513
Cac8I	GCNNGC	3 cut(s)	289, 625, 1011
CaiI	CAGNNNCTG	1 cut(s)	995
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	26, 354
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	313, 772, 814
CviAII	CATG	6 cut(s)	365, 431, 583, 746, 775, 874
CviQI	GTAC	3 cut(s)	313, 772, 814
DdeI	CTNAG	3 cut(s)	342, 971, 988
DpnI	GATC	5 cut(s)	63, 240, 360, 416, 461
DpnII	GATC	5 cut(s)	61, 238, 358, 414, 459
Eam1104I	CTCTTC	5 cut(s)	162, 470, 755, 777, 791
EarI	CTCTTC	5 cut(s)	162, 470, 755, 777, 791
EciI	GGCGGA	1 cut(s)	923
Ecl136II	GAGCTC	2 cut(s)	22, 1031
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	24, 1033
Eco31I	GGTCTC	1 cut(s)	991
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	2 cut(s)	26, 354
Eco53kI	GAGCTC	2 cut(s)	22, 1031
EcoICRI	GAGCTC	2 cut(s)	22, 1031
EcoRII	CCWGG	3 cut(s)	29, 92, 816
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	2 cut(s)	24, 1033
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	6 cut(s)	368, 434, 586, 749, 778, 877
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	6 cut(s)	364, 430, 582, 745, 774, 873
FauI	CCCGC	1 cut(s)	877
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	213
FriOI	GRGCYC	2 cut(s)	24, 1033
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	519, 624
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	2 cut(s)	381, 528
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	5 cut(s)	87, 141, 302, 410, 588
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	6 cut(s)	368, 434, 586, 749, 778, 877
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	172, 698, 967
HpaII	CCGG	5 cut(s)	87, 141, 302, 410, 588
HphI	GGTGA	5 cut(s)	61, 424, 682, 802, 877
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	7 cut(s)	61, 137, 177, 358, 614, 957, 972
Hpy188III	TCNNGA	2 cut(s)	122, 519
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	609, 670
HpyCH4V	TGCA	6 cut(s)	215, 287, 325, 551, 577, 745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 288, 383, 440, 548, 857
HpyF3I	CTNAG	3 cut(s)	342, 971, 988
Hsp92II	CATG	6 cut(s)	368, 434, 586, 749, 778, 877
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	5 cut(s)	61, 238, 358, 414, 459
LguI	GCTCTTC	1 cut(s)	791
LmnI	GCTCC	2 cut(s)	490, 534
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	2 cut(s)	111, 328
MaeI	CTAG	2 cut(s)	519, 624
MalI	GATC	5 cut(s)	63, 240, 360, 416, 461
MboI	GATC	5 cut(s)	61, 238, 358, 414, 459
MboII	GAAGA	9 cut(s)	7, 97, 179, 487, 772, 794, 808, 880, 1058
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	2 cut(s)	24, 1033
MluCI	AATT	6 cut(s)	40, 216, 306, 370, 497, 546
MlyI	GAGTC	2 cut(s)	707, 976
MmeI	TCCRAC	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	1 cut(s)	1025
MslI	CAYNNNNRTG	1 cut(s)	1105
MspI	CCGG	5 cut(s)	87, 141, 302, 410, 588
MspR9I	CCNGG	6 cut(s)	31, 94, 142, 410, 589, 818
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	3 cut(s)	31, 94, 818
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	6 cut(s)	108, 288, 383, 440, 548, 857
NciI	CCSGG	3 cut(s)	142, 410, 589
NdeII	GATC	5 cut(s)	61, 238, 358, 414, 459
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	6 cut(s)	368, 434, 586, 749, 778, 877
NlaIV	GGNNCC	6 cut(s)	28, 78, 91, 98, 139, 355
NspI	RCATGY	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	791
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	2 cut(s)	730, 879
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	214
Ple19I	CGATCG	1 cut(s)	361
PleI	GAGTC	2 cut(s)	706, 975
PpsI	GAGTC	2 cut(s)	706, 975
Psp124BI	GAGCTC	2 cut(s)	24, 1033
Psp6I	CCWGG	3 cut(s)	29, 92, 816
PspFI	CCCAGC	2 cut(s)	377, 524
PspGI	CCWGG	3 cut(s)	29, 92, 816
PspN4I	GGNNCC	6 cut(s)	28, 78, 91, 98, 139, 355
PspPI	GGNCC	2 cut(s)	26, 354
PstNI	CAGNNNCTG	1 cut(s)	995
PvuI	CGATCG	1 cut(s)	361
RsaI	GTAC	3 cut(s)	314, 773, 815
RsaNI	GTAC	3 cut(s)	313, 772, 814
RseI	CAYNNNNRTG	1 cut(s)	1105
SacI	GAGCTC	2 cut(s)	24, 1033
SapI	GCTCTTC	1 cut(s)	791
SaqAI	TTAA	1 cut(s)	1025
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	5 cut(s)	61, 238, 358, 414, 459
Sau96I	GGNCC	2 cut(s)	26, 354
SchI	GAGTC	2 cut(s)	707, 976
ScrFI	CCNGG	6 cut(s)	31, 94, 142, 410, 589, 818
SduI	GDGCHC	2 cut(s)	24, 1033
SfaNI	GCATC	2 cut(s)	111, 328
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	26, 354
SmiMI	CAYNNNNRTG	1 cut(s)	1105
SmlI	CTYRAG	1 cut(s)	1032
SmoI	CTYRAG	1 cut(s)	1032
Sse9I	AATT	6 cut(s)	40, 216, 306, 370, 497, 546
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	4 cut(s)	100, 191, 884, 908
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	519, 624
SstI	GAGCTC	2 cut(s)	24, 1033
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	6 cut(s)	29, 92, 140, 408, 587, 816
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	5 cut(s)	18, 123, 254, 692, 711
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	6 cut(s)	40, 216, 306, 370, 497, 546
TatI	WGTACW	1 cut(s)	771
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	1025
Tru9I	TTAA	1 cut(s)	1025
TscAI	CASTG	2 cut(s)	277, 513
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	217, 645, 773, 890
TspRI	CASTG	2 cut(s)	277, 513
Van91I	CCANNNNNTGG	2 cut(s)	730, 879
VpaK11BI	GGWCC	2 cut(s)	26, 354
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	518
XceI	RCATGY	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	2 cut(s)	519, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.